Evidence map›Paper›PMID 24039610›Full record

ArticlePLoS genetics2013

Cell-type specific features of circular RNA expression.

Julia Salzman, Raymond E Chen, Mari N Olsen, Peter L Wang, Patrick O Brown

Erratum issuedAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1,231 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,231citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,231 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  9. Acta pharmaceutica Sinica. B · 2026
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1,171 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

5 authors.

Julia SalzmanDepartment of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America.
Raymond E Chen
Mari N Olsen
Peter L Wang
Patrick O Brown

Funding

Discovering genomic rearrangements under selection in serious ovarian cancerK99CA168987 · NCI · STANFORD UNIVERSITY · PI SALZMAN, JULIA · 2012 to 2012
$110k
Howard Hughes Medical InstituteNCI NIH HHS 1K99CA168987-01NCI NIH HHS K99 CA168987
6 · The paper itself

Abstract

Thousands of loci in the human and mouse genomes give rise to circular RNA transcripts; at many of these loci, the predominant RNA isoform is a circle. Using an improved computational approach for circular RNA identification, we found widespread circular RNA expression in Drosophila melanogaster and estimate that in humans, circular RNA may account for 1% as many molecules as poly(A) RNA. Analysis of data from the ENCODE consortium revealed that the repertoire of genes expressing circular RNA, the ratio of circular to linear transcripts for each gene, and even the pattern of splice isoforms of circular RNAs from each gene were cell-type specific. These results suggest that biogenesis of circular RNA is an integral, conserved, and regulated feature of the gene expression program.

Indexed as

Gene Expression RegulationTranscription, GeneticAnimalsCell LineageDrosophila melanogasterExonsHumansMicePoly AProtein IsoformsRNARNA, CircularRNA, MessengerRNA SplicingSequence Analysis, RNAPoly AProtein IsoformsRNARNA, CircularRNA, Messenger

Identifiers

PMID24039610
PMCPMC3764148

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.