Evidence map›Paper›PMID 24038877›Full record

ArticleHuman mutation2013

Position of glycine substitutions in the triple helix of COL6A1, COL6A2, and COL6A3 is correlated with severity and mode of inheritance in collagen VI myopathies.

Russell J Butterfield, A Reghan Foley, Jahannaz Dastgir, Stephanie Asman, Diane M Dunn, Yaqun Zou, Ying Hu, Sandra Donkervoort, Kevin M Flanigan, Kathryn J Swoboda and 3 more

Abstract read
In one paragraph

Article in Human mutation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed, 1 pooled it
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 1 synthesis or guideline pooled it, 97 citations in OpenAlex.

  1. Guideline
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  13. A humanized knock-inbioRxiv : the preprint server for biology · 2024
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  15. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Russell J ButterfieldUniversity of Utah, Departments of Pediatrics and Neurology, Salt Lake City, Utah.
A Reghan Foley
Jahannaz Dastgir
Stephanie Asman
Diane M Dunn
Yaqun Zou
Ying Hu
Sandra Donkervoort
Kevin M Flanigan
Kathryn J Swoboda
Thomas L Winder
Robert B Weiss
Carsten G Bönnemann
National Institute of Neurological Disorders and Stroke · USUniversity of Utah · USGreat Ormond Street Hospital · GBNationwide Children's Hospital · US

Funding

Molecular and Clinical Manifestations of Matrix and Aggregate MyopathiesZIANS003129 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI BÖNNEMANN, CARSTEN · 2011 to 2025
$52.8M
Genetic /Developmental Mechanisms of Pediatric DiseasesK12HD001410 · NICHD · UNIVERSITY OF UTAH · PI CLARK, EDWARD BOWERSOX · 2003 to 2012
$4.3M
Intramural NIH HHSNICHD NIH HHS 5K12HD001410-10NICHD NIH HHS K12 HD001410
6 · The paper itself

Abstract

Glycine substitutions in the conserved Gly-X-Y motif in the triple helical (TH) domain of collagen VI are the most commonly identified mutations in the collagen VI myopathies including Ullrich congenital muscular dystrophy, Bethlem myopathy, and intermediate (INT) phenotypes. We describe clinical and genetic characteristics of 97 individuals with glycine substitutions in the TH domain of COL6A1, COL6A2, or COL6A3 and add a review of 97 published cases, for a total of 194 cases. Clinical findings include severe, INT, and mild phenotypes even from patients with identical mutations. INT phenotypes were most common, accounting for almost half of patients, emphasizing the importance of INT phenotypes to the overall phenotypic spectrum. Glycine substitutions in the TH domain are heavily clustered in a short segment N-terminal to the 17th Gly-X-Y triplet, where they are acting as dominants. The most severe cases are clustered in an even smaller region including Gly-X-Y triplets 10-15, accounting for only 5% of the TH domain. Our findings suggest that clustering of glycine substitutions in the N-terminal region of collagen VI is not based on features of the primary sequence. We hypothesize that this region may represent a functional domain within the triple helix.

Indexed as

Amino Acid SubstitutionInheritance PatternsMutationAdolescentAdultChildChild, PreschoolCollagen Type VIFibroblastsGenetic Association StudiesGlycineHumansMiddle AgedMuscle, SkeletalMuscular DiseasesPhenotypeCol6a1 protein, humanCOL6A2 protein, humanCollagen Type VIGlycineBethlem myopathycollagen VIgenotype-phenotype correlationUllrich congenital muscular dystrophy

Identifiers

PMID24038877
PMCPMC4520221
OpenAlexW2051136095

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.