Evidence map›Paper›PMID 24037725›Full record

ArticleBlood2014

Genome-wide copy-number analyses reveal genomic abnormalities involved in transformation of follicular lymphoma.

Alyssa Bouska, Timothy W McKeithan, Karen E Deffenbacher, Cynthia Lachel, George W Wright, Javeed Iqbal, Lynette M Smith, Weiwei Zhang, Can Kucuk, Andrea Rinaldi and 17 more

Abstract read
In one paragraph

Article in Blood, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
  3. Blood · 2018
    Trial
  4. Review
  5. Review
  6. Article
  7. Article
  8. Genetic and Epigenetic Aberrations ofCurrent issues in molecular biology · 2025
    Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Advances in the multi-omics landscape of follicular lymphoma.International journal of biological sciences · 2023
    Review
  16. Article
  17. Follicular lymphoma: updates for pathologists.Journal of pathology and translational medicine · 2022
    Review
  18. Cancers · 2021
    Article
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Alyssa BouskaPathology and Microbiology, University of Nebraska Medical Center, Omaha, NE;
Timothy W McKeithan
Karen E Deffenbacher
Cynthia Lachel
George W Wright
Javeed Iqbal
Lynette M Smith
Weiwei Zhang
Can Kucuk
Andrea Rinaldi
Francesco Bertoni
Jude Fitzgibbon
Kai Fu
Dennis D Weisenburger
Timothy C Greiner
Bhavana J Dave
Randy D Gascoyne
Andreas Rosenwald
German Ott
Elias Campo
Lisa M Rimsza
Jan Delabie
Elaine S Jaffe
Rita M Braziel
Joseph M Connors
Louis M Staudt
Wing-Chung Chan

Funding

Molecular diagnosis and outcome prediction in lymphomaZIABC011006 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI STAUDT, LOUIS · 2009 to 2025
$21.0M
Lymphoma Disease Discovery and DefintionZIASC000550 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI JAFFE, ELAINE · 2009 to 2025
$16.9M
Molecular Diagnosis and Prognosis in Aggressive LymphomaU01CA157581 · NCI · UNIVERSITY OF ARIZONA · PI RIMSZA, LISA · 2011 to 2015
$3.1M
UT M.D. Anderson Cancer Center Lymphoma SPOREP50CA136411 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KWAK, LARRY W · 2009 to 2011
$1.5M
NCI NIH HHS P50 CA136411NCI NIH HHS P50CA136411-01NCI NIH HHS U01 CA157581
6 · The paper itself

Abstract

Follicular lymphoma (FL), the second most common type of non-Hodgkin lymphoma in the western world, is characterized by the t(14;18) translocation, which is present in up to 90% of cases. We studied 277 lymphoma samples (198 FL and 79 transformed FL [tFL]) using a single-nucleotide polymorphism array to identify the secondary chromosomal abnormalities that drive the development of FL and its transformation to diffuse large B-cell lymphoma. Common recurrent chromosomal abnormalities in FL included gains of 2, 5, 7, 6p, 8, 12, 17q, 18, 21, and X and losses on 6q and 17p. We also observed many frequent small abnormalities, including losses of 1p36.33-p36.31, 6q23.3-q24.1, and 10q23.1-q25.1 and gains of 2p16.1-p15, 8q24.13-q24.3, and 12q12-q13.13, and identified candidate genes that may be driving this selection. Recurrent abnormalities more frequent in tFL samples included gains of 3q27.3-q28 and chromosome 11 and losses of 9p21.3 and 15q. Four abnormalities, gain of X or Xp and losses of 6q23.2-24.1 or 6q13-15, predicted overall survival. Abnormalities associated with transformation of the disease likely impair immune surveillance, activate the nuclear factor-κB pathway, and deregulate p53 and B-cell transcription factors.

Indexed as

Chromosome AberrationsGenome, HumanBiomarkers, TumorCell Transformation, NeoplasticChromosomes, HumanDNA Copy Number VariationsDNA, NeoplasmGene Expression ProfilingHumansLymphoma, FollicularLymphoma, Large B-Cell, DiffuseOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotidePrognosisSurvival RateTranslocation, GeneticBiomarkers, TumorDNA, Neoplasm

Identifiers

PMID24037725
PMCPMC3954050

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.