Evidence map›Paper›PMID 24034694›Full record

ArticleMolecular cell2013

Bacterial argonaute samples the transcriptome to identify foreign DNA.

Ivan Olovnikov, Ken Chan, Ravi Sachidanandam, Dianne K Newman, Alexei A Aravin

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 138 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
138citing papers in PubMed, 1 pooled it
17.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

138 citing papers in PubMed, 1 synthesis or guideline pooled it, 257 citations in OpenAlex.

  1. Pooled it
  2. How bacterial immune systems sense phage infection.Nature reviews. Microbiology · 2026
    Review
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78 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Ivan OlovnikovDivision of Biology, California Institute of Technology, 147-75, 1200E California Boulevard, Pasadena, CA 91125, USA; Institute of Molecular Genetics, Russian Academy of Sciences, Kurchatov Square 2, Moscow 123182, Russia.
Ken Chan
Ravi Sachidanandam
Dianne K Newman
Alexei A Aravin
California Institute of Technology · USIcahn School of Medicine at Mount Sinai · US

Funding

Molecular Mechanism of the piRNA BiogenesisR01GM097363 · NIGMS · CORNELL UNIVERSITY · PI ARAVIN, ALEXEI A. · 2011 to 2025
$4.0M
Taming of Small RNA-based Epigenetic MechanismsDP2OD007371 · OD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ARAVIN, ALEXEI A. · 2010 to 2010
$2.4M
Functions of Piwi proteins and short RNAs in germlineR00HD057233 · NICHD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ARAVIN, ALEXEI A. · 2010 to 2012
$738k
NICHD NIH HHS R00 HD057233NIGMS NIH HHS R01 GM097363NIH HHS DP2 OD007371NIH HHS DP2 OD007371A
6 · The paper itself

Abstract

Eukaryotic Argonautes bind small RNAs and use them as guides to find complementary RNA targets and induce gene silencing. Though homologs of eukaryotic Argonautes are present in many bacteria and archaea, their small RNA partners and functions are unknown. We found that the Argonaute of Rhodobacter sphaeroides (RsAgo) associates with 15-19 nt RNAs that correspond to the majority of transcripts. RsAgo also binds single-stranded 22-24 nt DNA molecules that are complementary to the small RNAs and enriched in sequences derived from exogenous plasmids as well as genome-encoded foreign nucleic acids such as transposons and phage genes. Expression of RsAgo in the heterologous E. coli system leads to formation of plasmid-derived small RNA and DNA and plasmid degradation. In a R. sphaeroides mutant lacking RsAgo, expression of plasmid-encoded genes is elevated. Our results indicate that RNAi-related processes found in eukaryotes are also conserved in bacteria and target foreign nucleic acids.

Indexed as

Argonaute ProteinsDNA, BacterialEscherichia coliGene Expression RegulationPlasmidsRhodobacter sphaeroidesRNA InterferenceRNA, Small InterferingTranscriptomeArgonaute ProteinsDNA, BacterialRNA, Small Interfering

Identifiers

PMID24034694
PMCPMC3809076
OpenAlexW2059240931

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.