Evidence map›Paper›PMID 24030951›Full record

ArticleBrain : a journal of neurology2013

DNA methylation map of mouse and human brain identifies target genes in Alzheimer's disease.

Jose V Sanchez-Mut, Ester Aso, Nicolas Panayotis, Ira Lott, Mara Dierssen, Alberto Rabano, Rocio G Urdinguio, Agustin F Fernandez, Aurora Astudillo, Jose I Martin-Subero and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Brain : a journal of neurology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 1 pooled it
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 1 synthesis or guideline pooled it, 144 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. DNA Methylation in Alzheimer's Disease.Current topics in behavioral neurosciences · 2025
    Review
  12. Article
  13. Epigenetics in Alzheimer's Disease: A Critical Overview.International journal of molecular sciences · 2024
    Review
  14. Article
  15. Review
  16. Review
  17. Pilot Study of the Long-Term Effects of Radiofrequency Electromagnetic Radiation Exposure on the Mouse Brain.International journal of environmental research and public health · 2023
    Article
  18. Review
  19. Review
  20. Review

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 10 institutions in 3 countries.

Jose V Sanchez-Mut1 Cancer Epigenetics and Biology Program (PEBC), Bellvitge Biomedical Research Institute (IDIBELL), 08908 L'Hospitalet, Barcelona, Catalonia, Spain.
Ester Aso
Nicolas Panayotis
Ira Lott
Mara Dierssen
Alberto Rabano
Rocio G Urdinguio
Agustin F Fernandez
Aurora Astudillo
Jose I Martin-Subero
Balazs Balint
Mario F Fraga
Antonio Gomez
Cecile Gurnot
Jean-Christophe Roux
Jesus Avila
Takao K Hensch
Isidre Ferrer
Manel Esteller
Institut d'Investigació Biomédica de Bellvitge · ESUniversidad de Oviedo · ESBellvitge University Hospital · ESHarvard University · USInserm · FRBiomedical Research Networking Center on Neurodegenerative Diseases · ESFundació ACE · ESInstitució Catalana de Recerca i Estudis Avançats · ESUniversitat Pompeu Fabra · ESUniversity of California, Irvine · US

Funding

UC Irvine Alzheimer's Disease Research Center Induced Pluripotent Stem Cell CoreP50AG016573 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI LAFERLA, FRANK M · 2000 to 2019
$37.0M
Predicting Cognitive Decline in Adults with Down SyndromeR01HD065160 · NICHD · UNIVERSITY OF CALIFORNIA-IRVINE · PI LOTT, IRA T. · 2009 to 2013
$2.3M
NIA NIH HHS P50 AG016573NIA NIH HHS P50-AG16573NICHD NIH HHS HD065160-01
6 · The paper itself

Abstract

The central nervous system has a pattern of gene expression that is closely regulated with respect to functional and anatomical regions. DNA methylation is a major regulator of transcriptional activity, and aberrations in the distribution of this epigenetic mark may be involved in many neurological disorders, such as Alzheimer's disease. Herein, we have analysed 12 distinct mouse brain regions according to their CpG 5'-end gene methylation patterns and observed their unique epigenetic landscapes. The DNA methylomes obtained from the cerebral cortex were used to identify aberrant DNA methylation changes that occurred in two mouse models of Alzheimer's disease. We were able to translate these findings to patients with Alzheimer's disease, identifying DNA methylation-associated silencing of three targets genes: thromboxane A2 receptor (TBXA2R), sorbin and SH3 domain containing 3 (SORBS3) and spectrin beta 4 (SPTBN4). These hypermethylation targets indicate that the cyclic AMP response element-binding protein (CREB) activation pathway and the axon initial segment could contribute to the disease.

Indexed as

Alzheimer DiseaseAnimalsBrainCyclic AMP Response Element-Binding ProteinDNADNA MethylationEpigenesis, GeneticGene ExpressionHumansMiceMice, Inbred C57BLPromoter Regions, GeneticCyclic AMP Response Element-Binding ProteinDNAAlzheimer’s diseasebrain regionsDNA methylationepigenetics

Identifiers

PMID24030951
PMCPMC3784285
OpenAlexW2132582013

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.