Evidence map›Paper›PMID 24030824›Full record

ArticleThe Journal of biological chemistry2013

Aspartic acid 397 in subunit B of the Na+-pumping NADH:quinone oxidoreductase from Vibrio cholerae forms part of a sodium-binding site, is involved in cation selectivity, and affects cation-binding site cooperativity.

Michael E Shea, Oscar Juárez, Jonathan Cho, Blanca Barquera

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Molecular dynamics modeling of the Vibrio cholera NaMolecular and cellular biochemistry · 2022
    Article
  2. Inhibitors of a NaThe Journal of biological chemistry · 2020
    Article
  3. Characterization of theThe Journal of biological chemistry · 2018
    Article
  4. Identification of the Catalytic Ubiquinone-binding Site ofThe Journal of biological chemistry · 2017
    Article
  5. Article
  6. Article
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  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Michael E SheaFrom the Department of Biology and Center of Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, New York 121801.
Oscar Juárez
Jonathan Cho
Blanca Barquera
Rensselaer Polytechnic Institute · US

Funding

Na+-pumping NADH:quinone oxidoreductase of V.choleraeR01GM069936 · NIGMS · RENSSELAER POLYTECHNIC INSTITUTE · PI BARQUERA, BLANCA · 2004 to 2009
$941k
NIGMS NIH HHS R01 GM069936
6 · The paper itself

Abstract

The Na(+)-pumping NADH:quinone complex is found in Vibrio cholerae and other marine and pathogenic bacteria. NADH:ubiquinone oxidoreductase oxidizes NADH and reduces ubiquinone, using the free energy released by this reaction to pump sodium ions across the cell membrane. In a previous report, a conserved aspartic acid residue in the NqrB subunit at position 397, located in the cytosolic face of this protein, was proposed to be involved in the capture of sodium. Here, we studied the role of this residue through the characterization of mutant enzymes in which this aspartic acid was substituted by other residues that change charge and size, such as arginine, serine, lysine, glutamic acid, and cysteine. Our results indicate that NqrB-Asp-397 forms part of one of the at least two sodium-binding sites and that both size and charge at this position are critical for the function of the enzyme. Moreover, we demonstrate that this residue is involved in cation selectivity, has a critical role in the communication between sodium-binding sites, by promoting cooperativity, and controls the electron transfer step involved in sodium uptake (2Fe-2S → FMNC).

Indexed as

Amino Acid SubstitutionAspartic AcidBacterial ProteinsBinding SitesElectron TransportIon TransportMutation, MissenseQuinone ReductasesSodiumVibrio choleraeAspartic AcidBacterial ProteinsNADH dehydrogenase (quinone)Quinone ReductasesSodiumBacteriaBacterial MetabolismBioenergetics-Electron Transfer ComplexRedoxSodium Transport

Identifiers

PMID24030824
PMCPMC3829434
OpenAlexW2047755916

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.