Evidence map›Paper›PMID 24029017›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Involvement of protein IF2 N domain in ribosomal subunit joining revealed from architecture and function of the full-length initiation factor.

Angelita Simonetti, Stefano Marzi, Isabelle M L Billas, Albert Tsai, Attilio Fabbretti, Alexander G Myasnikov, Pierre Roblin, Andrea C Vaiana, Isabelle Hazemann, Daniel Eiler and 4 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 68 citations in OpenAlex.

  1. Pooled it
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  6. Review
  7. Article
  8. YfmR is a translation factor that prevents ribosome stalling and cell death in the absence of EF-P.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Article
  11. Early divergence of translation initiation and elongation factors.Protein science : a publication of the Protein Society · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Translation initiation site of mRNA is selected through dynamic interaction with the ribosome.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 5 countries.

Angelita SimonettiCentre for Integrative Biology, Department of Integrated Structural Biology, Institute of Genetics and of Molecular and Cellular Biology, Centre National de la Recherche Scientifique (CNRS) Unité Mixte de Recherche 7104, Institut National de la Santé de la Recherche Médicale U964, Université de Strasbourg, 67404 Illkirch, France.
Stefano Marzi
Isabelle M L Billas
Albert Tsai
Attilio Fabbretti
Alexander G Myasnikov
Pierre Roblin
Andrea C Vaiana
Isabelle Hazemann
Daniel Eiler
Thomas A Steitz
Joseph D Puglisi
Claudio O Gualerzi
Bruno P Klaholz
Centre National de la Recherche Scientifique · FRStanford University · USUniversità di Camerino · ITArchitecture et Réactivité de l'arN · FRHoward Hughes Medical Institute · USMax Planck Institute for Biophysical Chemistry · DESynchrotron soleil · FRUniversité de Strasbourg · FR

Funding

STRUCTURAL BASIS FOR RIBOSOME FUNCTIONSR01GM051266 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PUGLISI, JOSEPH D · 1995 to 2021
$7.7M
European Research Council 243296NIGMS NIH HHS GM099587NIGMS NIH HHS GM51266NIGMS NIH HHS R01 GM051266
6 · The paper itself

Abstract

Translation initiation factor 2 (IF2) promotes 30S initiation complex (IC) formation and 50S subunit joining, which produces the 70S IC. The architecture of full-length IF2, determined by small angle X-ray diffraction and cryo electron microscopy, reveals a more extended conformation of IF2 in solution and on the ribosome than in the crystal. The N-terminal domain is only partially visible in the 30S IC, but in the 70S IC, it stabilizes interactions between IF2 and the L7/L12 stalk of the 50S, and on its deletion, proper N-formyl-methionyl(fMet)-tRNA(fMet) positioning and efficient transpeptidation are affected. Accordingly, fast kinetics and single-molecule fluorescence data indicate that the N terminus promotes 70S IC formation by stabilizing the productive sampling of the 50S subunit during 30S IC joining. Together, our data highlight the dynamics of IF2-dependent ribosomal subunit joining and the role played by the N terminus of IF2 in this process.

Indexed as

Cryoelectron MicroscopyModels, MolecularMutant ProteinsPeptide Chain Initiation, TranslationalProkaryotic Initiation Factor-2Protein BindingProtein Structure, TertiaryRibosome SubunitsRibosome Subunits, Large, BacterialRibosome Subunits, Small, BacterialScattering, Small AngleStructure-Activity RelationshipThermus thermophilusX-Ray DiffractionMutant ProteinsProkaryotic Initiation Factor-2integrated structural biologyprotein synthesis

Identifiers

PMID24029017
PMCPMC3785770
OpenAlexW2064231301

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.