Evidence map›Paper›PMID 24028550›Full record

ArticleFEMS yeast research2013

One-step assembly and targeted integration of multigene constructs assisted by the I-SceI meganuclease in Saccharomyces cerevisiae.

Niels G A Kuijpers, Soultana Chroumpi, Tim Vos, Daniel Solis-Escalante, Lizanne Bosman, Jack T Pronk, Jean-Marc Daran, Pascale Daran-Lapujade

Abstract read
In one paragraph

Article in FEMS yeast research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Functional dissection ofProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Recent technology advancements in large-scale DNA assembly.Quantitative biology (Beijing, China) · 2025
    Article
  4. Article
  5. Cyanamide-inducible expression of homing nucleaseSynthetic and systems biotechnology · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Pathway swapping: Toward modular engineering of essential cellular processes.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  17. Review
  18. Article
  19. Combinatorial metabolic pathway assembly in the yeast genome with RNA-guided Cas9.Journal of industrial microbiology & biotechnology · 2016
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Niels G A KuijpersDepartment of Biotechnology, Delft University of Technology, Delft, The Netherlands; Kluyver Centre for Genomics of Industrial Fermentation, Delft, The Netherlands.
Soultana Chroumpi
Tim Vos
Daniel Solis-Escalante
Lizanne Bosman
Jack T Pronk
Jean-Marc Daran
Pascale Daran-Lapujade

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In vivo assembly of overlapping fragments by homologous recombination in Saccharomyces cerevisiae is a powerful method to engineer large DNA constructs. Whereas most in vivo assembly methods reported to date result in circular vectors, stable integrated constructs are often preferred for metabolic engineering as they are required for large-scale industrial application. The present study explores the potential of combining in vivo assembly of large, multigene expression constructs with their targeted chromosomal integration in S. cerevisiae. Combined assembly and targeted integration of a ten-fragment 22-kb construct to a single chromosomal locus was successfully achieved in a single transformation process, but with low efficiency (5% of the analyzed transformants contained the correctly assembled construct). The meganuclease I-SceI was therefore used to introduce a double-strand break at the targeted chromosomal locus, thus to facilitate integration of the assembled construct. I-SceI-assisted integration dramatically increased the efficiency of assembly and integration of the same construct to 95%. This study paves the way for the fast, efficient, and stable integration of large DNA constructs in S. cerevisiae chromosomes.

Indexed as

Gene TargetingHomologous RecombinationAmino Acid Transport Systems, BasicCell Cycle ProteinsDeoxyribonucleases, Type II Site-SpecificDNA Breaks, Double-StrandedGene OrderGlycolysisGTP PhosphohydrolasesMutagenesis, InsertionalQuantitative Trait LociSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAmino Acid Transport Systems, BasicCAN1 protein, S cerevisiaeCell Cycle ProteinsDeoxyribonucleases, Type II Site-SpecificGTP PhosphohydrolasesSaccharomyces cerevisiae ProteinsSCEI protein, S cerevisiaeSPR3 protein, S cerevisiaehomologous recombinationin vivo assemblypathway engineeringsynthetic biology

Identifiers

PMID24028550
PMCPMC4068284

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.