Evidence map›Paper›PMID 24027009›Full record

ArticleHuman mutation2013

Inactivation of DNA mismatch repair by variants of uncertain significance in the PMS2 gene.

Mark Drost, Hester Koppejan, Niels de Wind

Open access · greenAbstract read
In one paragraph

Article in Human mutation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Genomic Microsatellite Signatures Identify Germline Mismatch Repair Deficiency and Risk of Cancer Onset.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2023
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. A functional assay-based procedure to classify mismatch repair gene variants in Lynch syndrome.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. The effect of genotypes and parent of origin on cancer risk and age of cancer development in PMS2 mutation carriers.Genetics in medicine : official journal of the American College of Medical Genetics · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mark DrostDepartment of Toxicogenetics, Leiden University Medical Center, Leiden, The Netherlands.
Hester Koppejan
Niels de Wind
Leiden University Medical Center · NL

Funding

Classifying DNA Mismatch Repair Gene Variants of Unknown SignificanceR01CA164944 · NCI · UNIVERSITY OF UTAH · PI GREENBLATT, MARC S, TAVTIGIAN, SEAN VAHRAM · 2013 to 2016
$2.2M
NCI NIH HHS 1R01CA164944-01A1NCI NIH HHS R01 CA164944
6 · The paper itself

Abstract

Lynch syndrome (LS) is a common cancer predisposition caused by an inactivating mutation in one of four DNA mismatch repair (MMR) genes. Frequently a variant of uncertain significance (VUS), rather than an obviously pathogenic mutation, is identified in one of these genes. The inability to define pathogenicity of such variants precludes targeted healthcare. Here, we have modified a cell-free assay to test VUS in the MMR gene PMS2 for functional activity. We have analyzed nearly all VUS in PMS2 found thus far and describe loss of MMR activity for five, suggesting the applicability of the assay for diagnosis of LS.

Indexed as

DNA Mismatch RepairGenetic VariationAdenosine TriphosphatasesColorectal Neoplasms, Hereditary NonpolyposisDNA-Binding ProteinsDNA Repair EnzymesHumansMismatch Repair Endonuclease PMS2Adenosine TriphosphatasesDNA-Binding ProteinsDNA Repair EnzymesMismatch Repair Endonuclease PMS2PMS2 protein, humanDNA mismatch repairLynch syndromePMS2VUS

Identifiers

PMID24027009
PMCPMC3858603
OpenAlexW2128044544

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.