Evidence map›Paper›PMID 24026172›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2013

High-resolution mapping of zym, a recessive gene for Zucchini yellow mosaic virus resistance in cucumber.

Masashi Amano, Akira Mochizuki, Yumi Kawagoe, Keisuke Iwahori, Kaori Niwa, Jiri Svoboda, Takanori Maeda, Yoshiyuki Imura

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
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  4. Review
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  6. Viruses · 2023
    Article
  7. Vegetable biology and breeding in the genomics era.Science China. Life sciences · 2023
    Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Fine genetic mapping of target leaf spot resistance gene cca-3 in cucumber, Cucumis sativus L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Masashi AmanoSaitama Gensyu Ikuseikai Co. Ltd., Kuki, Saitama, 346-0105, Japan, amano@tcat.ne.jp.
Akira Mochizuki
Yumi Kawagoe
Keisuke Iwahori
Kaori Niwa
Jiri Svoboda
Takanori Maeda
Yoshiyuki Imura
Nihon University · JPCrop Research Institute · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageUsing a high-resolution mapping approach, we identified a candidate gene for ZYMV resistance in cucumber. Our findings should assist the development of high-versatility molecular markers for MAS for ZYMV resistance. Zucchini yellow mosaic virus (ZYMV) causes significant disease, which leads to fruit yield loss in cucurbit crops. Since ZYMV resistance is often inherited recessively in cucumber, marker-assisted selection (MAS) is a useful tool for the development of resistant cucumber cultivars. Using 128 families of an F2:3 population derived from a cross between susceptible 'CS-PMR1' and resistant 'A192-18' cucumber inbred lines, we confirmed that ZYMV resistance is conferred by a single recessive locus: zym (A192-18) . We constructed a cucumber genetic linkage map that included 125 simple sequence repeat (SSR) markers segregating into 7 linkage groups (chromosomes). The zym (A192-18) locus was mapped to chromosome 6, at genetic distances of 0.9 and 1.3 cM from two closely linked SSR markers. For high-resolution genetic mapping, we identified new molecular markers cosegregating with the zym (A192-18) locus; using cucumber genomic and molecular marker resources and screening an F2 population of 2,429 plants, we narrowed down the zym (A192-18) locus to a <50-kb genomic region flanked by two SSR markers, which included six candidate genes. Sequence analysis of the candidate genes' coding regions revealed that the vacuolar protein sorting-associated protein 4-like (VPS4-like) gene had two SNPs between the parental lines. Based on SNPs of the VPS-4-like gene, we developed zym (A192-18) -linked DNA markers and found that genotypes associated with these markers were correlated with the ZYMV resistance phenotype in 48 cucumber inbred lines. According to our data, the gene encoding VPS4-like protein is a candidate for the zym (A192-18) locus. These results may be valuable for MAS for ZYMV resistance in cucumber.

Indexed as

Chromosome MappingGenes, RecessiveAmino Acid SequenceBase SequenceChromosomes, PlantCucumis sativusCucurbitaDisease ResistanceDNA, PlantGenes, PlantGenetic MarkersMicrosatellite RepeatsMolecular Sequence DataPhenotypePhylogenyPlant DiseasesDNA, PlantGenetic MarkersRNA, Messenger

Identifiers

PMID24026172
OpenAlexW2075571418

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.