Evidence map›Paper›PMID 24025128›Full record

ArticleEpidemiology and infection2014

Molecular prevalence of Trypanosoma spp. in wild rodents of Southeast Asia: influence of human settlement habitat.

P Pumhom, D Pognon, S Yangtara, N Thaprathorn, C Milocco, B Douangboupha, S Herder, Y Chaval, S Morand, S Jittapalapong and 1 more

Abstract read
In one paragraph

Article in Epidemiology and infection, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

P PumhomCenter for Agricultural Biotechnology, Kasetsart University, Kamphaeng Saen Campus, Nakhon Pathom, Thailand.
D PognonDepartment of Parasitology, Faculty of Veterinary Medicine, Kasetsart University, Bangkok, Thailand.
S YangtaraDepartment of Parasitology, Faculty of Veterinary Medicine, Kasetsart University, Bangkok, Thailand.
N ThaprathornDepartment of Helminthology, Faculty of Veterinary Medicine, Kasetsart University, Bangkok, Thailand.
C MiloccoDepartment of Parasitology, Faculty of Veterinary Medicine, Kasetsart University, Bangkok, Thailand.
B DouangbouphaNational Agricultural Research Centre, National Agricultural and Forestry Research Institute, Vientiane, Lao PDR.
S HerderDepartment of Parasitology, Faculty of Veterinary Medicine, Kasetsart University, Bangkok, Thailand.
Y ChavalINRA, UMR 1062 CBGP, F-34988 Montpellier sur Lez, France.
S MorandDepartment of Parasitology, Faculty of Veterinary Medicine, Kasetsart University, Bangkok, Thailand.
S JittapalapongDepartment of Parasitology, Faculty of Veterinary Medicine, Kasetsart University, Bangkok, Thailand.
M DesquesnesDepartment of Parasitology, Faculty of Veterinary Medicine, Kasetsart University, Bangkok, Thailand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

summaryThis study investigated the molecular prevalence of Trypanosoma lewisi and T. evansi in wild rodents from Cambodia, Lao PDR and Thailand. Between 2008 and 2012, rodents (and shrews) were trapped in nine locations and 616 of these were tested using three sets of primers: TRYP1 (amplifying ITS1 of ribosomal DNA of all trypanosomes), TBR (amplifying satellite genomic DNA of Trypanozoon parasites) and LEW1 (amplifying ITS1 of ribosomal DNA of T. lewisi). Based on the size of the PCR products using TRYP1, 17% were positive for T. lewisi and 1·0% positive for Trypanozoon. Results were confirmed by sequencing PCR products and by using more specific primers (LEW1 and TBR). The specificity of TRYP1 primers, however, failed as rodent DNA was amplified in some instances, giving unexpected product sizes. Using LEW1 primers, 13·3% of the samples were confirmed positive for T. lewisi, both by PCR and sequencing. In Thailand, T. lewisi was found in Rattus tanezumi, R. exulans and Berylmys; in Lao PDR, in R. tanezumi and R. exulans, and in Cambodia in R. tanezumi, R. exulans and R. norvegicus. Using TBR, 1·3% of the samples tested positive for Trypanozoon by PCR and sequencing; T. evansi is the only species of the Trypanozoon subgenus possibly present in wild Asian rodents. These results confirmed its presence in rodents from Thailand (R. tanezumi), Lao PDR (R. tanezumi, R. nitidus) and Cambodia (R. tanezumi, Niviventer fulvescens, Maxomys surifer). Based on the information related to rodent trapping, it was found that rodent species trapped in and around human dwellings had a higher prevalence of T. lewisi infection. R. tanezumi and R. exulans, two synanthropic species, were mainly found infected in this habitat suggesting a role as a reservoir and thus a potential source of T. lewisi for human infection.

Indexed as

AgingAnimalsAnimals, WildAsia, SoutheasternEcosystemFemaleHumansMaleModels, BiologicalPrevalenceRodent DiseasesRodentiaSeasonsSeroepidemiologic StudiesSex FactorsTrypanosoma

Identifiers

PMID24025128
PMCPMC9167665

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.