Evidence map›Paper›PMID 24023917›Full record

ArticlePloS one2013

Human Melanoma cells over-express extracellular matrix 1 (ECM1) which is regulated by TFAP2C.

Geeta Lal, Piedad Gomez Contreras, Mikhail Kulak, George Woodfield, Thomas Bair, Frederick E Domann, Ronald J Weigel

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
  2. Mgat4b-mediated selectiveProceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Geeta LalDepartment of Surgery, University of Iowa, Iowa City, Iowa, United States of America.
Piedad Gomez Contreras
Mikhail Kulak
George Woodfield
Thomas Bair
Frederick E Domann
Ronald J Weigel
University of Iowa · US

Funding

Pulmonary Toxicology Facility CoreP30ES005605 · NIEHS · UNIVERSITY OF IOWA · PI Jong Sung Kim · 1990 to 2026
$40.5M
MECHANISMS OF ESTROGEN RECEPTOR REGULATIONR01CA109294 · NCI · UNIVERSITY OF IOWA · PI WEIGEL, RONALD J · 2006 to 2010
$1.2M
Regulation of Extracellular Matrix 1(ECM1) and its role in thyroid carcinogenesisK08CA151658 · NCI · UNIVERSITY OF IOWA · PI LAL, GEETA · 2011 to 2016
$832k
NCI NIH HHS K08 CA151658NCI NIH HHS NIH 1 K08 CA151658-01A1NCI NIH HHS R01 CA109294NCI NIH HHS R01CA109294NIEHS NIH HHS P30 ES005605
6 · The paper itself

Abstract

Extracellular matrix 1 (ECM1) is over-expressed in multiple epithelial malignancies. However, knowledge regarding the expression of ECM1 in melanomas and the mechanisms of ECM1 regulation is limited. In this study, we found that ECM1 is over-expressed in several melanoma cell lines, when compared to primary melanocytes, and furthermore, that ECM1 expression paralleled that of TFAP2C levels in multiple cell lines. Knockdown of TFAP2C in the A375 cell line with siRNA led to a reduction in ECM1 expression, and upregulation of TFAP2C with adenoviral vectors in the WM793 cell line resulted in ECM1 upregulation. Utilizing 5' RACE to identify transcription start sites (TSS) and luciferase reporter assays in the ECM1-overexpressing A375 cell line, we identified the minimal promoter region of human ECM1 and demonstrate that an approximately 100bp fragment upstream of the TSS containing a TATA box and binding sites for AP1, SP1 and Ets is sufficient for promoter activity. Chromatin immunoprecipitation and direct sequencing (ChIP-seq) for TFAP2C in the A375 cell line identified an AP2 regulatory region in the promoter of the ECM1 gene. Gelshift assays further confirmed binding of TFAP2C to this site. ECM1 knockdown reduces melanoma cell attachment and is consistent with findings that ECM1 overexpression has been associated with a poor prognosis. Our investigations show an as yet unrecognized role for TFAP2C in melanoma via its regulation of ECM1.

Indexed as

Gene Expression Regulation, NeoplasticBase SequenceBinding SitesCell AdhesionCell Line, TumorExtracellular Matrix ProteinsHumansMelanomaMolecular Sequence DataPromoter Regions, GeneticTranscription Factor AP-2Transcription Initiation SiteECM1 protein, humanExtracellular Matrix ProteinsTFAP2C protein, humanTranscription Factor AP-2

Identifiers

PMID24023917
PMCPMC3759440
OpenAlexW1979497795

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.