Evidence map›Paper›PMID 24023759›Full record

ArticlePloS one2013

Whole genome mapping and re-organization of the nuclear and mitochondrial genomes of Babesia microti isolates.

Emmanuel Cornillot, Amina Dassouli, Aprajita Garg, Niseema Pachikara, Sylvie Randazzo, Delphine Depoix, Bernard Carcy, Stéphane Delbecq, Roger Frutos, Joana C Silva and 3 more

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. DoTropical medicine and infectious disease · 2024
    Article
  2. Article
  3. Transfusion-transmittedJournal of clinical microbiology · 2023
    Review
  4. Microbiology spectrum · 2023
    Article
  5. Article
  6. Whole genome sequence and diversity in multigene families ofFrontiers in cellular and infection microbiology · 2023
    Article
  7. Article
  8. HarnessingVaccines · 2022
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Comparative 3D genome organization in apicomplexan parasites.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Emmanuel CornillotCentre d'étude d'agents Pathogènes et Biotechnologies pour la Santé - UMR 5236, Montpellier, France ; Institut de Biologie Computationnelle, Montpellier, France.
Amina Dassouli
Aprajita Garg
Niseema Pachikara
Sylvie Randazzo
Delphine Depoix
Bernard Carcy
Stéphane Delbecq
Roger Frutos
Joana C Silva
Richard Sutton
Peter J Krause
Choukri Ben Mamoun

Funding

The Health Burden of A Recently Discovered Borrelia SpirocheteR21AI088079 · NIAID · YALE UNIVERSITY · PI FISH, DURLAND, KRAUSE, PETER JAMES · 2011 to 2012
$474k
NIAID NIH HHS AI007603NIAID NIH HHS R21 AI088079NIAID NIH HHS R21AI088079NIAID NIH HHS T15 AI007603Wellcome Trust 1006267
6 · The paper itself

Abstract

Babesia microti is the primary causative agent of human babesiosis, an emerging pathogen that causes a malaria-like illness with possible fatal outcome in immunocompromised patients. The genome sequence of the B. microti R1 strain was reported in 2012 and revealed a distinct evolutionary path for this pathogen relative to that of other apicomplexa. Lacking from the first genome assembly and initial molecular analyses was information about the terminal ends of each chromosome, and both the exact number of chromosomes in the nuclear genome and the organization of the mitochondrial genome remained ambiguous. We have now performed various molecular analyses to characterize the nuclear and mitochondrial genomes of the B. microti R1 and Gray strains and generated high-resolution Whole Genome maps. These analyses show that the genome of B. microti consists of four nuclear chromosomes and a linear mitochondrial genome present in four different structural types. Furthermore, Whole Genome mapping allowed resolution of the chromosomal ends, identification of areas of misassembly in the R1 genome, and genomic differences between the R1 and Gray strains, which occur primarily in the telomeric regions. These studies set the stage for a better understanding of the evolution and diversity of this important human pathogen.

Indexed as

AnimalsBabesia microtiGenome, MitochondrialGenome, Protozoan

Identifiers

PMID24023759
PMCPMC3762879

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.