Evidence map›Paper›PMID 24023717›Full record

ArticlePloS one2013

Mapping of Mcs30, a new mammary carcinoma susceptibility quantitative trait locus (QTL30) on rat chromosome 12: identification of fry as a candidate Mcs gene.

Xuefeng Ren, Jessica C Graham, Lichen Jing, Andrei M Mikheev, Yuan Gao, Jenny Pan Lew, Hong Xie, Andrea S Kim, Xiuling Shang, Cynthia Friedman and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact, top 95% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Frontiers in oncology · 2019
    Article
  9. Mapping Mammary Tumor Traits in the Rat.Methods in molecular biology (Clifton, N.J.) · 2019
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Xuefeng RenDepartment of Social and Preventive Medicine, the State University of New York, Buffalo, New York, United States of America ; Guangdong Medical Laboratory Animal Center, Foshan, Guangdong, China ; Fred Hutchinson Cancer Research Center (FHCRC), Seattle, Washington, United States of America ; NIEHS Center for Ecogenetics and Environmental Health, and the Department of Environmental and Occupational Health, University of Washington, Seattle, Washington, United States of America.
Jessica C Graham
Lichen Jing
Andrei M Mikheev
Yuan Gao
Jenny Pan Lew
Hong Xie
Andrea S Kim
Xiuling Shang
Cynthia Friedman
Graham Vail
Ming Zhu Fang
Yana Bromberg
Helmut Zarbl
Fred Hutch Cancer Center · USRutgers, The State University of New Jersey · USUniversity at Buffalo, State University of New York · USUniversity of Washington · US

Funding

Translational Research Support CoreP30ES005022 · NIEHS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI ROBERT John LAUMBACH · 1988 to 2026
$47.4M
XENOBIOTIC BIOTRANSFORMATION AND DISPOSITIONP30ES007033 · NIEHS · UNIVERSITY OF WASHINGTON · PI ALI SHOJAIE · 1995 to 2026
$42.5M
The FHCRC/UW Toxicogenomics ConsortiumU19ES011387 · NIEHS · UNIVERSITY OF WASHINGTON · PI ZARBL, HELMUT · 2001 to 2006
$7.7M
MAPPING GENETIC SUPPRESSORS OF EPIGENETIC CARCINOGENESISR01CA077222 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ZARBL, HELMUT · 1998 to 2002
$1.1M
NCI NIH HHS R01CA77222NIEHS NIH HHS P30 ES005022NIEHS NIH HHS P30ES005022NIEHS NIH HHS P30 ES007033NIEHS NIH HHS P30ES007033NIEHS NIH HHS U19 ES011387NIEHS NIH HHS U19ES011387
6 · The paper itself

Abstract

Rat strains differ dramatically in their susceptibility to mammary carcinogenesis. On the assumption that susceptibility genes are conserved across mammalian species and hence inform human carcinogenesis, numerous investigators have used genetic linkage studies in rats to identify genes responsible for differential susceptibility to carcinogenesis. Using a genetic backcross between the resistant Copenhagen (Cop) and susceptible Fischer 344 (F344) strains, we mapped a novel mammary carcinoma susceptibility (Mcs30) locus to the centromeric region on chromosome 12 (LOD score of ∼8.6 at the D12Rat59 marker). The Mcs30 locus comprises approximately 12 Mbp on the long arm of rat RNO12 whose synteny is conserved on human chromosome 13q12 to 13q13. After analyzing numerous genes comprising this locus, we identified Fry, the rat ortholog of the furry gene of Drosophila melanogaster, as a candidate Mcs gene. We cloned and determined the complete nucleotide sequence of the 13 kbp Fry mRNA. Sequence analysis indicated that the Fry gene was highly conserved across evolution, with 90% similarity of the predicted amino acid sequence among eutherian mammals. Comparison of the Fry sequence in the Cop and F344 strains identified two non-synonymous single nucleotide polymorphisms (SNPs), one of which creates a putative, de novo phosphorylation site. Further analysis showed that the expression of the Fry gene is reduced in a majority of rat mammary tumors. Our results also suggested that FRY activity was reduced in human breast carcinoma cell lines as a result of reduced levels or mutation. This study is the first to identify the Fry gene as a candidate Mcs gene. Our data suggest that the SNPs within the Fry gene contribute to the genetic susceptibility of the F344 rat strain to mammary carcinogenesis. These results provide the foundation for analyzing the role of the human FRY gene in cancer susceptibility and progression.

Indexed as

AnimalsBlotting, NorthernCell Line, TumorCells, CulturedFemaleGenetic Predisposition to DiseaseGenotypeHumansIn Situ Hybridization, FluorescenceMaleMammary Neoplasms, AnimalPhenotypePolymerase Chain ReactionProteinsQuantitative Trait LociRatsProteins

Identifiers

PMID24023717
PMCPMC3759375
OpenAlexW1974759039

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.