Evidence map›Paper›PMID 24023691›Full record

ArticlePloS one2013

Inducible knockdown of Plasmodium gene expression using the glmS ribozyme.

Parichat Prommana, Chairat Uthaipibull, Chayaphat Wongsombat, Sumalee Kamchonwongpaisan, Yongyuth Yuthavong, Ellen Knuepfer, Anthony A Holder, Philip J Shaw

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 147 papers.

0numbers the graph read from it
0cells of the map it votes in
147citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

147 citing papers in PubMed, 278 citations in OpenAlex.

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87 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Parichat PrommanaNational Center for Genetic Engineering and Biotechnology (BIOTEC), Khlong Nueng, Khlong Luang, Pathum Thani, Thailand.
Chairat Uthaipibull
Chayaphat Wongsombat
Sumalee Kamchonwongpaisan
Yongyuth Yuthavong
Ellen Knuepfer
Anthony A Holder
Philip J Shaw
National Center for Genetic Engineering and Biotechnology · THMRC London Institute of Medical Sciences · GB

Funding

Howard Hughes Medical InstituteMedical Research Council MC_U117532067
6 · The paper itself

Abstract

Conventional reverse genetic approaches for study of Plasmodium malaria parasite gene function are limited, or not applicable. Hence, new inducible systems are needed. Here we describe a method to control P. falciparum gene expression in which target genes bearing a glmS ribozyme in the 3' untranslated region are efficiently knocked down in transgenic P. falciparum parasites in response to glucosamine inducer. Using reporter genes, we show that the glmS ribozyme cleaves reporter mRNA in vivo leading to reduction in mRNA expression following glucosamine treatment. Glucosamine-induced ribozyme activation led to efficient reduction of reporter protein, which could be rapidly reversed by removing the inducer. The glmS ribozyme was validated as a reverse-genetic tool by integration into the essential gene and antifolate drug target dihydrofolate reductase-thymidylate synthase (PfDHFR-TS). Glucosamine treatment of transgenic parasites led to rapid and efficient knockdown of PfDHFR-TS mRNA and protein. PfDHFR-TS knockdown led to a growth/arrest mutant phenotype and hypersensitivity to pyrimethamine. The glmS ribozyme may thus be a tool for study of essential genes in P. falciparum and other parasite species amenable to transfection.

Indexed as

Gene Expression RegulationGene Knockdown TechniquesBacterial ProteinsGlucosamineGlutamine-Fructose-6-Phosphate Transaminase (Isomerizing)HumansMultienzyme ComplexesPhenotypePlasmodium falciparumReverse GeneticsRNA, CatalyticRNA, MessengerTetrahydrofolate DehydrogenaseThymidylate SynthaseBacterial Proteinscomponent S, glutamate mutase protein, BacteriaGlucosamineGlutamine-Fructose-6-Phosphate Transaminase (Isomerizing)Multienzyme ComplexesRNA, CatalyticRNA, MessengerTetrahydrofolate DehydrogenaseThymidylate Synthasethymidylate synthase-dihydrofolate reductase

Identifiers

PMID24023691
PMCPMC3758297
OpenAlexW2023408468

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.