Evidence map›Paper›PMID 24023065›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Ammonia binding to the oxygen-evolving complex of photosystem II identifies the solvent-exchangeable oxygen bridge (μ-oxo) of the manganese tetramer.

Montserrat Pérez Navarro, William M Ames, Håkan Nilsson, Thomas Lohmiller, Dimitrios A Pantazis, Leonid Rapatskiy, Marc M Nowaczyk, Frank Neese, Alain Boussac, Johannes Messinger and 2 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Article
  2. Article
  3. Insights from CaPhotosynthesis research · 2024
    Review
  4. The SPhotosynthesis research · 2024
    Article
  5. Article
  6. Assignment of the slowly exchanging substrate water of nature's water-splitting cofactor.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Functional Water Networks in Fully Hydrated Photosystem II.Journal of the American Chemical Society · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. CaMnAngewandte Chemie (International ed. in English) · 2021
    Article
  17. Article
  18. Article
  19. pKCommunications chemistry · 2020
    Article
  20. Water oxidation in photosystem II.Photosynthesis research · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Montserrat Pérez NavarroMax-Planck-Institut für Chemische Energiekonversion, D-45470 Mülheim an der Ruhr, Germany.
William M Ames
Håkan Nilsson
Thomas Lohmiller
Dimitrios A Pantazis
Leonid Rapatskiy
Marc M Nowaczyk
Frank Neese
Alain Boussac
Johannes Messinger
Wolfgang Lubitz
Nicholas Cox

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The assignment of the two substrate water sites of the tetra-manganese penta-oxygen calcium (Mn4O5Ca) cluster of photosystem II is essential for the elucidation of the mechanism of biological O-O bond formation and the subsequent design of bio-inspired water-splitting catalysts. We recently demonstrated using pulsed EPR spectroscopy that one of the five oxygen bridges (μ-oxo) exchanges unusually rapidly with bulk water and is thus a likely candidate for one of the substrates. Ammonia, a water analog, was previously shown to bind to the Mn4O5Ca cluster, potentially displacing a water/substrate ligand [Britt RD, et al. (1989) J Am Chem Soc 111(10):3522-3532]. Here we show by a combination of EPR and time-resolved membrane inlet mass spectrometry that the binding of ammonia perturbs the exchangeable μ-oxo bridge without drastically altering the binding/exchange kinetics of the two substrates. In combination with broken-symmetry density functional theory, our results show that (i) the exchangable μ-oxo bridge is O5 {using the labeling of the current crystal structure [Umena Y, et al. (2011) Nature 473(7345):55-60]}; (ii) ammonia displaces a water ligand to the outer manganese (MnA4-W1); and (iii) as W1 is trans to O5, ammonia binding elongates the MnA4-O5 bond, leading to the perturbation of the μ-oxo bridge resonance and to a small change in the water exchange rates. These experimental results support O-O bond formation between O5 and possibly an oxyl radical as proposed by Siegbahn and exclude W1 as the second substrate water.

Indexed as

AmmoniaElectronsLigandsMagnetic Resonance SpectroscopyManganeseOxygenPhotosystem II Protein ComplexSolventsSpin LabelsWaterAmmoniaLigandsManganeseOxygenPhotosystem II Protein ComplexSolventsSpin LabelsWaterMn clusterOECPSIIwater-oxidationwater oxidizing complex

Identifiers

PMID24023065
PMCPMC3785721

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.