Evidence map›Paper›PMID 24022755›Full record

ArticleLeukemia2014

Regulation of MEIS1 by distal enhancer elements in acute leukemia.

Q F Wang, Y J Li, J F Dong, B Li, J J Kaberlein, L Zhang, F E Arimura, R T Luo, J Ni, F He and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Leukemia, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Distinct gene expression characteristics in epithelial cell-International journal of medical sciences · 2019
    Pooled it
  2. Article
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  5. Distinct and opposite effects of leukemogenicProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  7. The Methylation Pattern for Knee and Hip Osteoarthritis.Frontiers in cell and developmental biology · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Multiple functional variants in long-range enhancer elements contribute to the risk of SNP rs965513 in thyroid cancer.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 3 countries.

Q F Wang1] Department of Medicine, Section of Hematology/Oncology, University of Chicago, Chicago, IL, USA [2] CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Y J Li1] CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China [2] Beijing Institute of Traditional Chinese Medicine, Beijing Hospital of Traditional Chinese Medicine Affiliated to Capital Medical University, Beijing, China.
J F DongDepartment of Medicine, Section of Hematology/Oncology, University of Chicago, Chicago, IL, USA.
B LiCAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
J J KaberleinDepartment of Medicine, Section of Hematology/Oncology, University of Chicago, Chicago, IL, USA.
L ZhangCAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
F E ArimuraDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
R T LuoDepartment of Medicine, Section of Hematology/Oncology, University of Chicago, Chicago, IL, USA.
J NiTongji Medical College of Huazhong, University of Science & Technology, Wuhan, China.
F HeCAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
J WuCAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
R MattisonDepartment of Medicine, Section of Hematology/Oncology, University of Chicago, Chicago, IL, USA.
J ZhouCAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
C Z WangDepartment of Anesthesia & Critical Care, University of Chicago, Chicago, IL, USA.
S PrabhakarGenome Institute of Singapore, Singapore.
M A NobregaDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
M J ThirmanDepartment of Medicine, Section of Hematology/Oncology, University of Chicago, Chicago, IL, USA.
University of Chicago · USChinese Academy of Sciences · CNBeijing Institute of Genomics · CNGenome Institute of Singapore · SG

Funding

RETROVIRUS PACKAGING, CONCENTRATING AND TITERINGP01CA105049 · NCI · LOYOLA UNIVERSITY CHICAGO · PI DIAZ, MANUEL ORESTES · 2005 to 2009
$6.5M
MLL Fusions and cooperating mutations in acute leukemiaR01CA104449 · NCI · UNIVERSITY OF CHICAGO · PI THIRMAN, MICHAEL J · 2004 to 2008
$1.5M
NCI NIH HHS CA105049NCI NIH HHS P01 CA105049NCI NIH HHS R01 CA104449
6 · The paper itself

Abstract

Aberrant activation of the three-amino-acid-loop extension homeobox gene MEIS1 shortens the latency and accelerates the onset and progression of acute leukemia, yet the molecular mechanism underlying persistent activation of the MEIS1 gene in leukemia remains poorly understood. Here we used a combined comparative genomics analysis and an in vivo transgenic zebrafish assay to identify six regulatory DNA elements that are able to direct green fluorescent protein expression in a spatiotemporal manner during zebrafish embryonic hematopoiesis. Analysis of chromatin characteristics and regulatory signatures suggests that many of these predicted elements are potential enhancers in mammalian hematopoiesis. Strikingly, one of the enhancer elements (E9) is a frequent integration site in retroviral-induced mouse acute leukemia. The genomic region corresponding to enhancer E9 is differentially marked by H3K4 monomethylation and H3K27 acetylation, hallmarks of active enhancers, in multiple leukemia cell lines. Decreased enrichment of these histone marks is associated with downregulation of MEIS1 expression during hematopoietic differentiation. Further, MEIS1/HOXA9 transactivate this enhancer via a conserved binding motif in vitro, and participate in an autoregulatory loop that modulates MEIS1 expression in vivo. Our results suggest that an intronic enhancer regulates the expression of MEIS1 in hematopoiesis and contributes to its aberrant expression in acute leukemia.

Indexed as

Enhancer Elements, GeneticAcute DiseaseAnimalsHomeodomain ProteinsHumansLeukemiaMiceMyeloid Ecotropic Viral Integration Site 1 ProteinNeoplasm ProteinsHomeodomain ProteinsMEIS1 protein, humanMeis1 protein, mouseMyeloid Ecotropic Viral Integration Site 1 ProteinNeoplasm Proteins

Identifiers

PMID24022755
PMCPMC5774621
OpenAlexW2018906282

What OpenQuestion holds

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LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.