Evidence map›Paper›PMID 24022482›Full record

ArticleThe Journal of biological chemistry2013

Cytosolic carboxypeptidase 5 removes α- and γ-linked glutamates from tubulin.

Iryna Berezniuk, Peter J Lyons, Juan J Sironi, Hui Xiao, Mitsutoshi Setou, Ruth H Angeletti, Koji Ikegami, Lloyd D Fricker

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 53 citations in OpenAlex.

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  12. Genetic dissection of non-syndromic retinitis pigmentosa.Indian journal of ophthalmology · 2022
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  20. Tubulin Post-Translational Modifications and Microtubule Dynamics.International journal of molecular sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Iryna BerezniukFrom the Departments of Molecular Pharmacology and; Neuroscience and.
Peter J LyonsFrom the Departments of Molecular Pharmacology and.
Juan J SironiFrom the Departments of Molecular Pharmacology and.
Hui Xiaothe Laboratory of Macromolecular Analysis and Proteomics, Albert Einstein College of Medicine, Bronx, New York 10461 and.
Mitsutoshi Setouthe Department of Cell Biology and Anatomy, Hamamatsu University School of Medicine, 1-20-1 Handayama, Hamamatsu 431-3192, Japan.
Ruth H Angelettithe Laboratory of Macromolecular Analysis and Proteomics, Albert Einstein College of Medicine, Bronx, New York 10461 and.
Koji Ikegamithe Department of Cell Biology and Anatomy, Hamamatsu University School of Medicine, 1-20-1 Handayama, Hamamatsu 431-3192, Japan.
Lloyd D FrickerFrom the Departments of Molecular Pharmacology and; Neuroscience and. Electronic address: lloyd.fricker@einstein.yu.edu.
Albert Einstein College of Medicine · USHamamatsu University School of Medicine · JPLaboratory of Molecular Genetics · PLSociety for Neuroscience · US

Funding

REGULATION OF ENKEPHALIN CONVERTASE--CARBOXYPEPTIDASE ER01DA004494 · NIDA · YESHIVA UNIVERSITY · PI FRICKER, LLOYD D · 1987 to 2015
$5.9M
Proteomics CoreP20DA026149 · NIDA · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI ANGELETTI, RUTH HOGUE · 2009 to 2011
$2.9M
H/D Exchange Coupled to MS to Study Drug-Induced Change in Microtuble StructureR01CA124898 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI HORWITZ, SUSAN BAND · 2007 to 2010
$1.3M
NCI NIH HHS 1R01CA124898NCI NIH HHS R01 CA124898NIDA NIH HHS 1P20 DA026149NIDA NIH HHS DA-004494NIDA NIH HHS P20 DA026149NIDA NIH HHS R01 DA004494
6 · The paper itself

Abstract

Cytosolic carboxypeptidase 5 (CCP5) is a member of a subfamily of enzymes that cleave C-terminal and/or side chain amino acids from tubulin. CCP5 was proposed to selectively cleave the branch point of glutamylated tubulin, based on studies involving overexpression of CCP5 in cell lines and detection of tubulin forms with antisera. In the present study, we examined the activity of purified CCP5 toward synthetic peptides as well as soluble α- and β-tubulin and paclitaxel-stabilized microtubules using a combination of antisera and mass spectrometry to detect the products. Mouse CCP5 removes multiple glutamate residues and the branch point glutamate from the side chains of porcine brain α- and β-tubulin. In addition, CCP5 excised C-terminal glutamates from detyrosinated α-tubulin. The enzyme also removed multiple glutamate residues from side chains and C termini of paclitaxel-stabilized microtubules. CCP5 both shortens and removes side chain glutamates from synthetic peptides corresponding to the C-terminal region of β3-tubulin, whereas cytosolic carboxypeptidase 1 shortens the side chain without cleaving the peptides' γ-linked residues. The rate of cleavage of α linkages by CCP5 is considerably slower than that of removal of a single γ-linked glutamate residue. Collectively, our data show that CCP5 functions as a dual-functional deglutamylase cleaving both α- and γ-linked glutamate from tubulin.

Indexed as

AnimalsCarboxypeptidasesGlutamic AcidMiceMicrotubulesPaclitaxelSf9 CellsSpodopteraTubulinTubulin ModulatorsCarboxypeptidasesCCP5 protein, mouseGlutamic AcidPaclitaxelTubulinTubulin ModulatorsCarboxypeptidaseCytosolic CarboxypeptidaseEnzymesMetalloenzymesPeptidasesTubulin

Identifiers

PMID24022482
PMCPMC3798508
OpenAlexW1804468462

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.