ArticleStandards in genomic sciences2013
Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling.
Article in Standards in genomic sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- Autotrophic growth ofFrontiers in microbiology · 2026Article
- TheFrontiers in microbiology · 2025Article
- Isolation and Characterization ofInternational journal of molecular sciences · 2023Article
- Incomplete denitrification phenotypes in diverse Thermus species from diverse geothermal spring sediments and adjacent soils in southwest China.Extremophiles : life under extreme conditions · 2022Article
- An essential role for tungsten in the ecology and evolution of a previously uncultivated lineage of anaerobic, thermophilic Archaea.Nature communications · 2022Article
- Different Regulatory Strategies of Arsenite Oxidation by Two IsolatedFrontiers in microbiology · 2022Article
- A Novel Gene Cluster Is Involved in the Degradation of Lignin-Derived Monoaromatics in Thermus oshimai JL-2.Applied and environmental microbiology · 2021Article
- Comparative Metagenomic Analysis of Two Hot Springs From Ourense (Northwestern Spain) and Others Worldwide.Frontiers in microbiology · 2021Article
- Diverse respiratory capacity among Thermus strains from US Great Basin hot springs.Extremophiles : life under extreme conditions · 2020Article
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- Complete Genome Analysis ofFrontiers in microbiology · 2017Article
- Whole Genome Comparison of Thermus sp. NMX2.A1 Reveals Principle Carbon Metabolism Differences with Closest Relation Thermus scotoductus SA-01.G3 (Bethesda, Md.) · 2016Article
- High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China.Genome announcements · 2016Article
- Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs.Nature communications · 2016Article
- High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway.Standards in genomic sciences · 2016Article
- Complete Genome Sequence of Thermus aquaticus Y51MC23.PloS one · 2015Article
- A third subunit in ancestral cytochrome c-dependent nitric oxide reductases.Applied and environmental microbiology · 2014Article
- Transferable denitrification capability of Thermus thermophilus.Applied and environmental microbiology · 2014Review
- It is time for a new type of type to facilitate naming the microbial world.New microbes and new infectionsArticle
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Authors and funding
24 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The complete genomes of Thermus oshimai JL-2 and T. thermophilus JL-18 each consist of a circular chromosome, 2.07 Mb and 1.9 Mb, respectively, and two plasmids ranging from 0.27 Mb to 57.2 kb. Comparison of the T. thermophilus JL-18 chromosome with those from other strains of T. thermophilus revealed a high degree of synteny, whereas the megaplasmids from the same strains were highly plastic. The T. oshimai JL-2 chromosome and megaplasmids shared little or no synteny with other sequenced Thermus strains. Phylogenomic analyses using a concatenated set of conserved proteins confirmed the phylogenetic and taxonomic assignments based on 16S rRNA phylogenetics. Both chromosomes encode a complete glycolysis, tricarboxylic acid (TCA) cycle, and pentose phosphate pathway plus glucosidases, glycosidases, proteases, and peptidases, highlighting highly versatile heterotrophic capabilities. Megaplasmids of both strains contained a gene cluster encoding enzymes predicted to catalyze the sequential reduction of nitrate to nitrous oxide; however, the nitrous oxide reductase required for the terminal step in denitrification was absent, consistent with their incomplete denitrification phenotypes. A sox gene cluster was identified in both chromosomes, suggesting a mode of chemolithotrophy. In addition, nrf and psr gene clusters in T. oshmai JL-2 suggest respiratory nitrite ammonification and polysulfide reduction as possible modes of anaerobic respiration.
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