Evidence map›Paper›PMID 24019866›Full record

ArticlePloS one2013

Geographically structured populations of Cryptococcus neoformans Variety grubii in Asia correlate with HIV status and show a clonal population structure.

Kantarawee Khayhan, Ferry Hagen, Weihua Pan, Sitali Simwami, Matthew C Fisher, Retno Wahyuningsih, Arunaloke Chakrabarti, Anuradha Chowdhary, Reiko Ikeda, Saad J Taj-Aldeen and 14 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 1 synthesis or guideline pooled it, 98 citations in OpenAlex.

  1. Pooled it
  2. Sequence Types ofPathogens (Basel, Switzerland) · 2026
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  3. Molecular Epidemiology and Antifungal Susceptibility ofInfection and drug resistance · 2026
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  6. Genomic Characterization ofVeterinary sciences · 2025
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  7. Current Approaches in Genome Assembly of Human Fungal Pathogens.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Molecular epidemiological investigation ofMicrobiology spectrum · 2024
    Article
  13. Review
  14. Genotyping Analysis ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  15. Review
  16. Importance of Clinical Isolates inJournal of fungi (Basel, Switzerland) · 2023
    Review
  17. Frontiers in microbiology · 2023
    Article
  18. Article
  19. Journal of fungi (Basel, Switzerland) · 2022
    Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 17 institutions in 12 countries.

Kantarawee KhayhanDepartment of Microbiology and Parasitology, Faculty of Medical Sciences, University of Phayao, Phayao, Thailand ; CBS-KNAW Fungal Biodiversity Centre, Department of Yeast and Basidiomycete Research, Utrecht, The Netherlands ; Department of Internal Medicine and Infectious Diseases, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Ferry Hagen
Weihua Pan
Sitali Simwami
Matthew C Fisher
Retno Wahyuningsih
Arunaloke Chakrabarti
Anuradha Chowdhary
Reiko Ikeda
Saad J Taj-Aldeen
Ziauddin Khan
Margaret Ip
Darma Imran
Ridhawati Sjam
Pojana Sriburee
Wanqing Liao
Kunyaluk Chaicumpar
Varaporn Vuddhakul
Wieland Meyer
Luciana Trilles
Leo J J van Iersel
Jacques F Meis
Corné H W Klaassen
Teun Boekhout
Canisius-Wilhelmina Ziekenhuis · NLImperial College London · GBSecond Military Medical University · CNUniversity of Indonesia · IDWestmead Hospital · AUChiang Mai University · THChinese University of Hong Kong · HKHamad Medical Corporation · QAKhon Kaen University · THKuwait University · KWMeiji Pharmaceutical University · JPPost Graduate Institute of Medical Education and Research · INPrince of Songkla University · THRumah Sakit Umum Pusat Nasional Dr. Cipto Mangunkusumo · IDUniversity of Delhi · INUniversity of Phayao · THUtrecht University · NL

Funding

Biotechnology and Biological Sciences Research Council BB/D52637X/1Medical Research Council MR/K000373/1Wellcome Trust
6 · The paper itself

Abstract

Cryptococcosis is an important fungal disease in Asia with an estimated 140,000 new infections annually the majority of which occurs in patients suffering from HIV/AIDS. Cryptococcus neoformans variety grubii (serotype A) is the major causative agent of this disease. In the present study, multilocus sequence typing (MLST) using the ISHAM MLST consensus scheme for the C. neoformans/C. gattii species complex was used to analyse nucleotide polymorphisms among 476 isolates of this pathogen obtained from 8 Asian countries. Population genetic analysis showed that the Asian C. neoformans var. grubii population shows limited genetic diversity and demonstrates a largely clonal mode of reproduction when compared with the global MLST dataset. HIV-status, sequence types and geography were found to be confounded. However, a correlation between sequence types and isolates from HIV-negative patients was observed among the Asian isolates. Observations of high gene flow between the Middle Eastern and the Southeastern Asian populations suggest that immigrant workers in the Middle East were originally infected in Southeastern Asia.

Indexed as

GeographyAsiaCryptococcus neoformansHIV InfectionsHumans

Identifiers

PMID24019866
PMCPMC3760895
OpenAlexW2116173177

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.