Evidence map›Paper›PMID 24019483›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Semisynthetic K+ channels show that the constricted conformation of the selectivity filter is not the C-type inactivated state.

Prasanna K Devaraneni, Alexander G Komarov, Corey A Costantino, Jordan J Devereaux, Kimberly Matulef, Francis I Valiyaveetil

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 65 citations in OpenAlex.

  1. A Cost-EffectiveBioengineering (Basel, Switzerland) · 2024
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Structures of Gating Intermediates in a KJournal of molecular biology · 2021
    Article
  8. Article
  9. Article
  10. High-Resolution Structures of KHandbook of experimental pharmacology · 2021
    Article
  11. Article
  12. Selectivity filter ion binding affinity determines inactivation in a potassium channel.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. KScience advances · 2020
    Article
  14. Modulation of Function, Structure and Clustering of KInternational journal of molecular sciences · 2020
    Review
  15. Review
  16. Gating modules of the AMPA receptor pore domain revealed by unnatural amino acid mutagenesis.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Article
  18. Article
  19. Identifying coupled clusters of allostery participants through chemical shift perturbations.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Prasanna K DevaraneniProgram in Chemical Biology, Department of Physiology and Pharmacology, Oregon Health and Science University, Portland, OR 97239.
Alexander G Komarov
Corey A Costantino
Jordan J Devereaux
Kimberly Matulef
Francis I Valiyaveetil
Oregon Health & Science University · US

Funding

Probing functional mechanisms in K+ channels using unnatural mutagenesisR01GM087546 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI VALIYAVEETIL, FRANCIS · 2009 to 2022
$4.0M
Unnatural amino acid mutagenesis to probe ion channel structure and functionF32GM087852 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI KOMAROV, ALEXANDER G · 2010 to 2010
$39k
NIGMS NIH HHS F32 GM087852NIGMS NIH HHS GM087546NIGMS NIH HHS GM087852NIGMS NIH HHS R01 GM087546
6 · The paper itself

Abstract

C-type inactivation of K(+) channels plays a key role in modulating cellular excitability. During C-type inactivation, the selectivity filter of a K(+) channel changes conformation from a conductive to a nonconductive state. Crystal structures of the KcsA channel determined at low K(+) or in the open state revealed a constricted conformation of the selectivity filter, which was proposed to represent the C-type inactivated state. However, structural studies on other K(+) channels do not support the constricted conformation as the C-type inactivated state. In this study, we address whether the constricted conformation of the selectivity filter is in fact the C-type inactivated state. The constricted conformation can be blocked by substituting the first conserved glycine in the selectivity filter with the unnatural amino acid d-Alanine. Protein semisynthesis was used to introduce d-Alanine into the selectivity filters of the KcsA channel and the voltage-gated K(+) channel KvAP. For semisynthesis of the KvAP channel, we developed a modular approach in which chemical synthesis is limited to the selectivity filter whereas the rest of the protein is obtained by recombinant means. Using the semisynthetic KcsA and KvAP channels, we show that blocking the constricted conformation of the selectivity filter does not prevent inactivation, which suggests that the constricted conformation is not the C-type inactivated state.

Indexed as

Ion Channel GatingAlanineAmino Acid SubstitutionBacterial ProteinsGlycineModels, MolecularMutationPotassiumPotassium ChannelsProtein Structure, SecondaryAlanineBacterial ProteinsGlycinePotassiumPotassium Channelsprokaryotic potassium channel

Identifiers

PMID24019483
PMCPMC3785774
OpenAlexW2015766644

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.