Evidence map›Paper›PMID 24019147›Full record

ArticleMolecular & cellular proteomics : MCP2013

Identification of BZR1-interacting proteins as potential components of the brassinosteroid signaling pathway in Arabidopsis through tandem affinity purification.

Chunming Wang, Jian-Xiu Shang, Qi-Xiu Chen, Juan A Oses-Prieto, Ming-Yi Bai, Yihong Yang, Min Yuan, Yu-Lan Zhang, Cong-Cong Mu, Zhiping Deng and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
8.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
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  9. A Revised View of theInternational journal of molecular sciences · 2023
    Review
  10. Review
  11. Article
  12. Article
  13. Article
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  15. Article
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  18. CaFrontiers in plant science · 2020
    Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Chunming WangInstitute of Molecular Cell Biology, Hebei Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, 050024, China;
Jian-Xiu Shang
Qi-Xiu Chen
Juan A Oses-Prieto
Ming-Yi Bai
Yihong Yang
Min Yuan
Yu-Lan Zhang
Cong-Cong Mu
Zhiping Deng
Chuang-Qi Wei
Alma L Burlingame
Zhi-Yong Wang
Ying Sun
Hebei Normal University · CNCarnegie Institution for Science · USUniversity of California, San Francisco · USDepartment of Plant Biology · US

Funding

YEAST THREONINE &SERINE KINASESP41RR001614 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ORTIZ DE MONTELLANO, PAUL R · 1985 to 2011
$24.1M
Genetic Biochemical Studies of Signaling in Growth and AcclimationR01GM066258 · NIGMS · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI ZHIYONG WANG · 2002 to 2026
$10.5M
Bio-Organic Biomedical Mass Spectromy ResourceP41GM103481 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURLINGAME, ALMA L · 2012 to 2015
$6.4M
PURCHASE OF LTQ FT-ICR HYBRID MASS SPECTROMETER: (HEI) PROTEOMICSS10RR019934 · NCRR · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI BURLINGAME, ALMA L · 2004 to 2004
$1.0M
PURCHASE OF Q TOF MASS SPECTROMETERS10RR012961 · NCRR · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI JAMES, THOMAS L · 1998 to 1998
–
NCRR NIH HHS 1S10RR012961NCRR NIH HHS 1S10RR019934NCRR NIH HHS P41 RR001614NCRR NIH HHS S10 RR019934NIGMS NIH HHS P41 GM103481NIGMS NIH HHS R01 GM066258NIGMS NIH HHS R01GM066258PHS HHS NCRR P41RR001614
6 · The paper itself

Abstract

Brassinosteroids (BRs) are essential phytohormones for plant growth and development. BRs are perceived by the cell surface receptor kinase BRI1, and downstream signal transduction through multiple components leads to activation of the transcription factors BZR1 and BZR2/BES1. BZR1 activity is highly controlled by BR through reversible phosphorylation, protein degradation, and nucleocytoplasmic shuttling. To further understand the molecular function of BZR1, we performed tandem affinity purification of the BZR1 complex and identified BZR1-associated proteins using mass spectrometry. These BZR1-associated proteins included several known BR signaling components, such as BIN2, BSK1, 14-3-3λ, and PP2A, as well as a large number of proteins with previously unknown functions in BR signal transduction, including the kinases MKK5 and MAPK4, histone deacetylase 19, cysteine proteinase inhibitor 6, a DEAD-box RNA helicase, cysteine endopeptidases RD21A and RD21B, calmodulin-binding transcription activator 5, ubiquitin protease 12, cyclophilin 59, and phospholipid-binding protein synaptotagmin A. Their interactions with BZR1 were confirmed by in vivo and in vitro assays. Furthermore, MKK5 was found to phosphorylate BZR1 in vitro. This study demonstrates an effective method for purifying proteins associated with low-abundance transcription factors, and identifies new BZR1-interacting proteins with potentially important roles in BR response.

Indexed as

Gene Expression Regulation, PlantSignal TransductionArabidopsisArabidopsis ProteinsBrassinosteroidsChromatography, AffinityDNA-Binding ProteinsMass SpectrometryMitogen-Activated Protein Kinase KinasesMolecular Sequence AnnotationNuclear ProteinsPhosphorylationPlant Growth RegulatorsProtein BindingProtein Interaction MappingProtein IsoformsArabidopsis ProteinsBES1 protein, ArabidopsisBrassinosteroidsBRI1 protein, ArabidopsisBZR1 protein, ArabidopsisDNA-Binding ProteinsMitogen-Activated Protein Kinase KinasesMKK5 protein, ArabidopsisNuclear ProteinsPlant Growth RegulatorsProtein IsoformsProtein Kinases

Identifiers

PMID24019147
PMCPMC3861714
OpenAlexW2156956417

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.