Evidence map›Paper›PMID 24018484›Full record

ArticleScientific reports2013

Microbiomic signatures of psoriasis: feasibility and methodology comparison.

Alexander Statnikov, Alexander V Alekseyenko, Zhiguo Li, Mikael Henaff, Guillermo I Perez-Perez, Martin J Blaser, Constantin F Aliferis

2 registry-linked trialsOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 42 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 2 pooled it
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03058900 nacompletednot on this mapstarted 2017, after this paper: background citation

Efficacy and Safety of Fecal Microbiota Transplantation (FMT) in Patients With Peripheral Psoriatic Arthritis: a 6-month, Double-Blind, Randomized, Placebo-Controlled Trial

TypeinterventionalSponsorOdense University HospitalRan2017 to 2020Enrolled31ConditionsPsoriatic ArthritisArmsFecal microbiota transplantation (FMT), Drug: Placebo (saline), Methotrexate (MTX)
NCT03149900 completednot on this mapstarted 2016, after this paper: background citation

Exploratory Evaluation of Biomarkers Associated With Treatment Response to Cosentyx (Secukinumab) in Psoriasis Patients

TypeobservationalSponsorDiamant ThaciRan2016 to 2019Enrolled40ConditionsPsoriasis VulgarisArmsSecukinumab
3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 2 syntheses or guidelines pooled it, 108 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Decrypting Skin Microbiome in Psoriasis: Current Status.Journal of psoriasis and psoriatic arthritis · 2023
    Review
  4. Article
  5. The human microbiome in disease and pathology.APMIS : acta pathologica, microbiologica, et immunologica Scandinavica · 2022
    Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Psoriasis Pathogenesis and Treatment.International journal of molecular sciences · 2019
    Review
  16. Psoriasis: Obesity and Fatty Acids.Frontiers in immunology · 2019
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Alexander Statnikov1] Center for Health Informatics and Bioinformatics (CHIBI), New York University Langone Medical Center, New York, New York [2] Department of Medicine, New York University School of Medicine, New York, New York.
Alexander V Alekseyenko
Zhiguo Li
Mikael Henaff
Guillermo I Perez-Perez
Martin J Blaser
Constantin F Aliferis
NYU Langone Health · USNew York University · USVA NY Harbor Healthcare System · US

Funding

INSTITUTIONAL CLINICAL AND TRANSLATIONAL SCIENCE AWARDUL1RR029893 · NCRR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CRONSTEIN, BRUCE NEIL · 2009 to 2011
$17.7M
Evaluation of the cutaneous microbiome in psoriasisUH2AR057506 · NIAMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BLASER, MARTIN J · 2009 to 2014
$1.6M
Methods for Accurate and Efficient Discovery of Local Pathways.R01LM011179 · NLM · UNIVERSITY OF MINNESOTA · PI ALIFERIS, CONSTANTIN F. · 2012 to 2015
$945k
NCRR NIH HHS 1UL1 RR029893NCRR NIH HHS UL1 RR029893NIAMS NIH HHS UH2 AR057506NIAMS NIH HHS UH2 AR057506-01S1NLM NIH HHS R01 LM011179NLM NIH HHS R01 LM011179-01A1
6 · The paper itself

Abstract

Psoriasis is a common chronic inflammatory disease of the skin. We sought to use bacterial community abundance data to assess the feasibility of developing multivariate molecular signatures for differentiation of cutaneous psoriatic lesions, clinically unaffected contralateral skin from psoriatic patients, and similar cutaneous loci in matched healthy control subjects. Using 16S rRNA high-throughput DNA sequencing, we assayed the cutaneous microbiome for 51 such matched specimen triplets including subjects of both genders, different age groups, ethnicities and multiple body sites. None of the subjects had recently received relevant treatments or antibiotics. We found that molecular signatures for the diagnosis of psoriasis result in significant accuracy ranging from 0.75 to 0.89 AUC, depending on the classification task. We also found a significant effect of DNA sequencing and downstream analysis protocols on the accuracy of molecular signatures. Our results demonstrate that it is feasible to develop accurate molecular signatures for the diagnosis of psoriasis from microbiomic data.

Indexed as

MetagenomeMicrobiotaBacteriaCase-Control StudiesHumansPsoriasisReproducibility of ResultsRNA, Ribosomal, 16SSequence Analysis, DNARNA, Ribosomal, 16S

Identifiers

PMID24018484
PMCPMC3965359
OpenAlexW1964582198

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.