Evidence map›Paper›PMID 24015287›Full record

Trial reportPloS one2013

LRRK2 and RIPK2 variants in the NOD 2-mediated signaling pathway are associated with susceptibility to Mycobacterium leprae in Indian populations.

Patrick Marcinek, Aditya Nath Jha, Vidyagouri Shinde, Arun Sundaramoorthy, Raja Rajkumar, Naveen Chandra Suryadevara, Sanjeev Kumar Neela, Hoang van Tong, Vellingiri Balachander, Vijaya Lakshmi Valluri and 2 more

Open access · goldAbstract readClinical Trial
In one paragraph

Trial report in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Functions of the RIP kinase family members in the skin.Cellular and molecular life sciences : CMLS · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Leucine Rich Repeat Kinase 2 and Innate Immunity.Frontiers in neuroscience · 2020
    Review
  11. Review
  12. Review
  13. Review
  14. Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Human genetics of mycobacterial disease.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Review
  20. LRRK2 is a negative regulator ofThe EMBO journal · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Patrick MarcinekInstitute of Tropical Medicine, University of Tübingen, Tübingen, Germany.
Aditya Nath Jha
Vidyagouri Shinde
Arun Sundaramoorthy
Raja Rajkumar
Naveen Chandra Suryadevara
Sanjeev Kumar Neela
Hoang van Tong
Vellingiri Balachander
Vijaya Lakshmi Valluri
Kumarasamy Thangaraj
Thirumalaisamy P Velavan
Lepra Society · INCentre for Cellular and Molecular Biology · INUniversity of Tübingen · DEBharathiar University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In recent years, genome wide association studies have discovered a large number of gene loci that play a functional role in innate and adaptive immune pathways associated with leprosy susceptibility. The immunological control of intracellular bacteria M. leprae is modulated by NOD2-mediated signaling of Th1 responses. In this study, we investigated 211 clinically classified leprosy patients and 230 ethnically matched controls in Indian population by genotyping four variants in NOD2 (rs9302752A/G), LRRK2 (rs1873613A/G), RIPK2 (rs40457A/G and rs42490G/A). The LRRK2 locus is associated with leprosy outcome. The LRRK2 rs1873613A minor allele and respective rs1873613AA genotypes were significantly associated with an increased risk whereas the LRRK2 rs1873613G major allele and rs1873613GG genotypes confer protection in paucibacillary and leprosy patients. The reconstructed GA haplotypes from RIPK2 rs40457A/G and rs42490G/A variants was observed to contribute towards increased risk whereas haplotypes AA was observed to confer protective role. Our results indicate that a possible shared mechanisms underlying the development of these two clinical forms of the disease as hypothesized. Our findings confirm and validates the role of gene variants involved in NOD2-mediated signalling pathways that play a role in immunological control of intracellular bacteria M. leprae.

Indexed as

Genetic Predisposition to DiseaseMycobacterium lepraeAllelesFemaleHaplotypesHumansIndiaLeprosyLeucine-Rich Repeat Serine-Threonine Protein Kinase-2MaleNod2 Signaling Adaptor ProteinPolymorphism, GeneticProtein Serine-Threonine KinasesReceptor-Interacting Protein Serine-Threonine Kinase 2Signal TransductionTh1 CellsLeucine-Rich Repeat Serine-Threonine Protein Kinase-2LRRK2 protein, humanNOD2 protein, humanNod2 Signaling Adaptor ProteinProtein Serine-Threonine KinasesReceptor-Interacting Protein Serine-Threonine Kinase 2RIPK2 protein, human

Identifiers

PMID24015287
PMCPMC3756038
OpenAlexW2040300434

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.