Evidence map›Paper›PMID 24015191›Full record

ArticlePloS one2013

No evidence for selection of HIV-1 with enhanced gag-protease or Nef function among breakthrough infections in the CAPRISA 004 tenofovir microbicide trial.

Denis R Chopera, Jaclyn K Mann, Philip Mwimanzi, Saleha Omarjee, Xiaomei T Kuang, Nonkululeko Ndabambi, Sarah Goodier, Eric Martin, Vivek Naranbhai, Salim Abdool Karim and 6 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Denis R ChoperaHIV Pathogenesis Programme, Doris Duke Medical Research Institute, Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa ; KwaZulu-Natal Research Institute for Tuberculosis and HIV, Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa ; Institute of Infectious Disease and Molecular Medicine, and the Division of Medical Virology, University of Cape Town and National Health Laboratory Services, Cape Town, South Africa ; Faculty of Health Sciences, Simon Fraser University, Burnaby, British Columbia, Canada ; British Columbia Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada.
Jaclyn K Mann
Philip Mwimanzi
Saleha Omarjee
Xiaomei T Kuang
Nonkululeko Ndabambi
Sarah Goodier
Eric Martin
Vivek Naranbhai
Salim Abdool Karim
Quarraisha Abdool Karim
Zabrina L Brumme
Thumbi Ndung'u
Carolyn Williamson
Mark A Brockman
CAPRISA 004 TRAPS Team
Simon Fraser University · CAUniversity of KwaZulu-Natal · ZANational Health Laboratory Service · ZAAIDS Vancouver · CACentre for the AIDS Programme of Research in South Africa · ZAUniversity of Cape Town · ZA

Funding

THE ROLE OF CTL ESCAPE MUTATIONS IN ATTENUATING HIV-1 SUBTYPE C INFECTIONR01AI078936 · NIAID · UNIVERSITY OF CAPE TOWN · PI WILLIAMSON, CAROLYN · 2008 to 2011
$322k
CIHR HOP-115700CIHR MOP-93536CIHR THA-118569Howard Hughes Medical InstituteNIAID NIH HHS R01 AI078936NIAID NIH HHS R01-AI078936PHS HHS U19-A151794
6 · The paper itself

Abstract

backgroundUse of antiretroviral-based microbicides for HIV-1 prophylaxis could introduce a transmission barrier that inadvertently facilitates the selection of fitter viral variants among incident infections. To investigate this, we assessed the in vitro function of gag-protease and nef sequences from participants who acquired HIV-1 during the CAPRISA 004 1% tenofovir microbicide gel trial. METHODS AND

resultsWe isolated the earliest available gag-protease and nef gene sequences from 83 individuals and examined their in vitro function using recombinant viral replication capacity assays and surface protein downregulation assays, respectively. No major phylogenetic clustering and no significant differences in gag-protease or nef function were observed in participants who received tenofovir gel versus placebo gel prophylaxis.

conclusionResults indicate that the partial protective effects of 1% tenofovir gel use in the CAPRISA 004 trial were not offset by selection of transmitted/early HIV-1 variants with enhanced Gag-Protease or Nef fitness.

Indexed as

AdenineAnti-HIV AgentsClinical Trials as TopicFemalegag Gene Products, Human Immunodeficiency VirusHIV-1HIV InfectionsHumansnef Gene Products, Human Immunodeficiency VirusOrganophosphonatesPhylogenySequence Analysis, DNATenofovirVaginal Creams, Foams, and JelliesVirus ReplicationAdenineAnti-HIV Agentsgag Gene Products, Human Immunodeficiency Virusnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1OrganophosphonatesTenofovirVaginal Creams, Foams, and Jellies

Identifiers

PMID24015191
PMCPMC3756015
OpenAlexW2071357105

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.