Evidence map›Paper›PMID 24014666›Full record

ArticleMicrobiology (Reading, England)2013

A synthetic system for expression of components of a bacterial microcompartment.

Frank Sargent, Fordyce A Davidson, Ciarán L Kelly, Rachelle Binny, Natasha Christodoulides, David Gibson, Emelie Johansson, Katarzyna Kozyrska, Lucia Licandro Lado, Jane MacCallum and 7 more

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Bacterial microcompartments.Nature reviews. Microbiology · 2018
    Review
  6. Article
  7. Review
  8. Article
  9. Cellular factories for coenzyme QMicrobial cell factories · 2017
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Diverse bacterial microcompartment organelles.Microbiology and molecular biology reviews : MMBR · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Frank SargentCollege of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK.
Fordyce A DavidsonDivision of Mathematics, College of Art, Science & Engineering, University of Dundee, Dundee DD1 4HN, Scotland, UK.
Ciarán L KellyCollege of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK.
Rachelle BinnyDivision of Mathematics, College of Art, Science & Engineering, University of Dundee, Dundee DD1 4HN, Scotland, UK.
Natasha ChristodoulidesCollege of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK.
David GibsonSchool of Computing, College of Art, Science & Engineering, University of Dundee, Dundee DD1 4HN, Scotland, UK.
Emelie JohanssonCollege of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK.
Katarzyna KozyrskaCollege of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK.
Lucia Licandro LadoCollege of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK.
Jane MacCallumCollege of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK.
Rachel MontagueSchool of Computing, College of Art, Science & Engineering, University of Dundee, Dundee DD1 4HN, Scotland, UK.
Brian OrtmannCollege of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK.
Richard OwenCollege of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK.
Sarah J CoulthurstCollege of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK.
Lionel DupuyEcological Sciences, The James Hutton Institute, Invergowrie, Dundee DD2 5DA, Scotland, UK.
Alan R PrescottCollege of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK.
Tracy PalmerCollege of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK.
University of Dundee · GBJames Hutton Institute · GB

Funding

Wellcome TrustWellcome Trust WT096168MA
6 · The paper itself

Abstract

In general, prokaryotes are considered to be single-celled organisms that lack internal membrane-bound organelles. However, many bacteria produce proteinaceous microcompartments that serve a similar purpose, i.e. to concentrate specific enzymic reactions together or to shield the wider cytoplasm from toxic metabolic intermediates. In this paper, a synthetic operon encoding the key structural components of a microcompartment was designed based on the genes for the Salmonella propanediol utilization (Pdu) microcompartment. The genes chosen included pduA, -B, -J, -K, -N, -T and -U, and each was shown to produce protein in an Escherichia coli chassis. In parallel, a set of compatible vectors designed to express non-native cargo proteins was also designed and tested. Engineered hexa-His tags allowed isolation of the components of the microcompartments together with co-expressed, untagged, cargo proteins. Finally, an in vivo protease accessibility assay suggested that a PduD-GFP fusion could be protected from proteolysis when co-expressed with the synthetic microcompartment operon. This work gives encouragement that it may be possible to harness the genes encoding a non-native microcompartment for future biotechnological applications.

Indexed as

Metabolic Networks and PathwaysEscherichia coliGenetic VectorsPropylene GlycolsRecombinant ProteinsSalmonellaPropylene GlycolsRecombinant Proteins

Identifiers

PMID24014666
PMCPMC3836489
OpenAlexW2018608699

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.