Evidence map›Paper›PMID 24014139›Full record

ArticlePloS one2013

Glycine insertion makes yellow fluorescent protein sensitive to hydrostatic pressure.

Tomonobu M Watanabe, Katsumi Imada, Keiko Yoshizawa, Masayoshi Nishiyama, Chiaki Kato, Fumiyoshi Abe, Takamitsu J Morikawa, Miki Kinoshita, Hideaki Fujita, Toshio Yanagida

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Tomonobu M WatanabeRIKEN Quantitative Biology Center (QBiC), Suita, Osaka, Japan ; PRESTO, Japan Science and Technology Agency, Kawaguchi, Saitama, Japan ; WPI, Immunology Frontier Research Center, Osaka University, Suita, Osaka, Japan ; Graduate School of Frontier Bioscience, Osaka University, Suita, Osaka, Japan.
Katsumi Imada
Keiko Yoshizawa
Masayoshi Nishiyama
Chiaki Kato
Fumiyoshi Abe
Takamitsu J Morikawa
Miki Kinoshita
Hideaki Fujita
Toshio Yanagida
Osaka University · JPJapan Agency for Marine-Earth Science and Technology · JPJapan Science and Technology Agency · JPKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fluorescent protein-based indicators for intracellular environment conditions such as pH and ion concentrations are commonly used to study the status and dynamics of living cells. Despite being an important factor in many biological processes, the development of an indicator for the physicochemical state of water, such as pressure, viscosity and temperature, however, has been neglected. We here found a novel mutation that dramatically enhances the pressure dependency of the yellow fluorescent protein (YFP) by inserting several glycines into it. The crystal structure of the mutant showed that the tyrosine near the chromophore flipped toward the outside of the β-can structure, resulting in the entry of a few water molecules near the chromophore. In response to changes in hydrostatic pressure, a spectrum shift and an intensity change of the fluorescence were observed. By measuring the fluorescence of the YFP mutant, we succeeded in measuring the intracellular pressure change in living cell. This study shows a new strategy of design to engineer fluorescent protein indicators to sense hydrostatic pressure.

Indexed as

Amino Acid SubstitutionMutation, MissenseBacterial ProteinsEscherichia coliGlycineHydrostatic PressureLuminescent ProteinsBacterial ProteinsGlycineLuminescent Proteinsyellow fluorescent protein, Bacteria

Identifiers

PMID24014139
PMCPMC3754940
OpenAlexW2147871162

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.