Evidence map›Paper›PMID 24014030›Full record

ArticleThe Journal of biological chemistry2013

Assessing the conformational changes of pb5, the receptor-binding protein of phage T5, upon binding to its Escherichia coli receptor FhuA.

Cécile Breyton, Ali Flayhan, Frank Gabel, Mathilde Lethier, Grégory Durand, Pascale Boulanger, Mohamed Chami, Christine Ebel

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Review
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  4. Article
  5. Structural basis for host recognition and superinfection exclusion by bacteriophage T5.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Article
  8. Review
  9. Examining Membrane Proteins by Neutron Scattering.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  10. Article
  11. Targeting mechanisms of tailed bacteriophages.Nature reviews. Microbiology · 2018
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 7 institutions in 2 countries.

Cécile BreytonFrom the Université Grenoble Alpes, Institut de Biologie Structurale (IBS), F-38027 Grenoble, France,; CNRS, UMR5075, IBS, F-38027 Grenoble, France,; the Commissariat à l'Energie Atomique, DSV, IBS, F-38027 Grenoble, France,. Electronic address: Cecile.Breyton@ibs.fr.
Ali FlayhanFrom the Université Grenoble Alpes, Institut de Biologie Structurale (IBS), F-38027 Grenoble, France,; CNRS, UMR5075, IBS, F-38027 Grenoble, France,; the Commissariat à l'Energie Atomique, DSV, IBS, F-38027 Grenoble, France.
Frank GabelFrom the Université Grenoble Alpes, Institut de Biologie Structurale (IBS), F-38027 Grenoble, France,; CNRS, UMR5075, IBS, F-38027 Grenoble, France,; the Commissariat à l'Energie Atomique, DSV, IBS, F-38027 Grenoble, France.
Mathilde LethierFrom the Université Grenoble Alpes, Institut de Biologie Structurale (IBS), F-38027 Grenoble, France,; CNRS, UMR5075, IBS, F-38027 Grenoble, France,; the Commissariat à l'Energie Atomique, DSV, IBS, F-38027 Grenoble, France.
Grégory Durandthe Université d'Avignon, Equipe Chimie Bioorganique et Systèmes Amphiphiles, F-84029 Avignon, France,; the Institut des Biomolécules Max Mousseron, UMR 5247, F-34093 Montpellier, France.
Pascale Boulangerthe Institut de Biochimie et de Biophysique Moléculaire et Cellulaire, Université Paris-Sud, UMR CNRS 8619, F-91405 Orsay, France, and.
Mohamed Chamithe Center for Cellular Imaging and NanoAnalytics, Biozentrum, University Basel, CH-4058 Basel, Switzerland.
Christine EbelFrom the Université Grenoble Alpes, Institut de Biologie Structurale (IBS), F-38027 Grenoble, France,; CNRS, UMR5075, IBS, F-38027 Grenoble, France,; the Commissariat à l'Energie Atomique, DSV, IBS, F-38027 Grenoble, France.
Institut de Biologie Structurale · FRCentre National de la Recherche Scientifique · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRInstitut de Biochimie et Biophysique Moléculaire et Cellulaire · FRInstitut des Biomolécules Max Mousseron · FRUniversité Grenoble Alpes · FRUniversity of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Within tailed bacteriophages, interaction of the receptor-binding protein (RBP) with the target cell triggers viral DNA ejection into the host cytoplasm. In the case of phage T5, the RBP pb5 and the receptor FhuA, an outer membrane protein of Escherichia coli, have been identified. Here, we use small angle neutron scattering and electron microscopy to investigate the FhuA-pb5 complex. Specific deuteration of one of the partners allows the complete masking in small angle neutron scattering of the surfactant and unlabeled proteins when the complex is solubilized in the fluorinated surfactant F6-DigluM. Thus, individual structures within a membrane protein complex can be described. The solution structure of FhuA agrees with its crystal structure; that of pb5 shows an elongated shape. Neither displays significant conformational changes upon interaction. The mechanism of signal transduction within phage T5 thus appears different from that of phages binding cell wall saccharides, for which structural information is available.

Indexed as

Bacterial Outer Membrane ProteinsEscherichia coliEscherichia coli ProteinsMultiprotein ComplexesNeutron DiffractionProtein Structure, QuaternaryProtein Structure, TertiaryScattering, Small AngleSiphoviridaeSurface-Active AgentsViral Structural ProteinsBacterial Outer Membrane ProteinsEscherichia coli ProteinsFhuA protein, E coliMultiprotein ComplexesSurface-Active AgentsViral Structural ProteinsBacteriophageBiophysicsElectron Microscopy (EM)Fluorinated SurfactantMembrane ProteinsSmall Angle Neutron ScatteringViral Protein

Identifiers

PMID24014030
PMCPMC3798546
OpenAlexW2124624215

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.