Evidence map›Paper›PMID 24014019›Full record

ArticleThe Journal of biological chemistry2013

Conformational plasticity and ligand binding of bacterial monoacylglycerol lipase.

Srinivasan Rengachari, Philipp Aschauer, Matthias Schittmayer, Nicole Mayer, Karl Gruber, Rolf Breinbauer, Ruth Birner-Gruenberger, Ingrid Dreveny, Monika Oberer

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 54 citations in OpenAlex.

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  7. Biodegradation of used polyethylene bags by a new marine strain of Alcaligenes faecalis LNDR-1.Environmental science and pollution research international · 2021
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  18. Anatomy of enzyme channels.BMC bioinformatics · 2014
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Srinivasan RengachariFrom the Institute of Molecular Biosciences, University of Graz, Humboldtstrasse 50/3, A-8010 Graz, Austria.
Philipp Aschauer
Matthias Schittmayer
Nicole Mayer
Karl Gruber
Rolf Breinbauer
Ruth Birner-Gruenberger
Ingrid Dreveny
Monika Oberer
University of Graz · ATGraz University of Technology · ATMedical University of Graz · ATUniversity of Nottingham · GB

Funding

Austrian Science Fund FWF P 24857
6 · The paper itself

Abstract

Monoacylglycerol lipases (MGLs) play an important role in lipid catabolism across all kingdoms of life by catalyzing the release of free fatty acids from monoacylglycerols. The three-dimensional structures of human and a bacterial MGL were determined only recently as the first members of this lipase family. In addition to the α/β-hydrolase core, they showed unexpected structural similarities even in the cap region. Nevertheless, the structural basis for substrate binding and conformational changes of MGLs is poorly understood. Here, we present a comprehensive study of five crystal structures of MGL from Bacillus sp. H257 in its free form and in complex with different substrate analogs and the natural substrate 1-lauroylglycerol. The occurrence of different conformations reveals a high degree of conformational plasticity of the cap region. We identify a specific residue, Ile-145, that might act as a gatekeeper restricting access to the binding site. Site-directed mutagenesis of Ile-145 leads to significantly reduced hydrolase activity. Bacterial MGLs in complex with 1-lauroylglycerol, myristoyl, palmitoyl, and stearoyl substrate analogs enable identification of the binding sites for the alkyl chain and the glycerol moiety of the natural ligand. They also provide snapshots of the hydrolytic reaction of a bacterial MGL at different stages. The alkyl chains are buried in a hydrophobic tunnel in an extended conformation. Binding of the glycerol moiety is mediated via Glu-156 and water molecules. Analysis of the structural features responsible for cap plasticity and the binding modes of the ligands suggests conservation of these features also in human MGL.

Indexed as

BacillusBacterial ProteinsCrystallography, X-RayHumansHydrolysisMonoacylglycerol LipasesMonoglyceridesMutagenesis, Site-DirectedProtein Structure, TertiaryStructure-Activity RelationshipSubstrate SpecificityBacterial ProteinsMonoacylglycerol LipasesMonoglyceridesCrystal StructureLipaseLipid MetabolismLipidsMGLMonoacylglycerolMonoglyceridePhosphonate InhibitorSubstrate AnalogsX-ray Crystallography

Identifiers

PMID24014019
PMCPMC3829422
OpenAlexW2171132541

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.