Evidence map›Paper›PMID 24013844›Full record

ArticleCellular & molecular immunology2014

The DNA-binding factor Ctcf critically controls gene expression in macrophages.

Tatjana Nikolic, Dowty Movita, Margaretha E H Lambers, Claudia Ribeiro de Almeida, Paula Biesta, Kim Kreefft, Marjolein J W de Bruijn, Ingrid Bergen, Niels Galjart, Andre Boonstra and 1 more

Open access · greenAbstract read
In one paragraph

Article in Cellular & molecular immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
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  10. Chromatin structure undergoes global and local reorganization during murine dendritic cell development and activation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Review
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  13. Review
  14. miR-708 Negatively Regulates TNFMediators of inflammation · 2021
    Article
  15. Article
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  17. Review
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  19. Review
  20. Distinct macrophage populations direct inflammatory versus physiological changes in adipose tissue.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Tatjana NikolicDepartment of Pulmonary Medicine, Erasmus MC, Rotterdam, The Netherlands.
Dowty MovitaDepartment of Gastroenterology and Hepatology, Erasmus MC, Rotterdam, The Netherlands.
Margaretha E H LambersDepartment of Pulmonary Medicine, Erasmus MC, Rotterdam, The Netherlands.
Claudia Ribeiro de AlmeidaDepartment of Pulmonary Medicine, Erasmus MC, Rotterdam, The Netherlands.
Paula BiestaDepartment of Gastroenterology and Hepatology, Erasmus MC, Rotterdam, The Netherlands.
Kim KreefftDepartment of Gastroenterology and Hepatology, Erasmus MC, Rotterdam, The Netherlands.
Marjolein J W de BruijnDepartment of Pulmonary Medicine, Erasmus MC, Rotterdam, The Netherlands.
Ingrid BergenDepartment of Pulmonary Medicine, Erasmus MC, Rotterdam, The Netherlands.
Niels GaljartDepartment of Cell Biology and Genetics, Erasmus MC, Rotterdam, The Netherlands.
Andre BoonstraDepartment of Gastroenterology and Hepatology, Erasmus MC, Rotterdam, The Netherlands.
Rudi HendriksDepartment of Pulmonary Medicine, Erasmus MC, Rotterdam, The Netherlands.
Erasmus University Rotterdam · NLErasmus MC · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Macrophages play an important role in immunity and homeostasis. Upon pathogen recognition via specific receptors, they rapidly induce inflammatory responses. This process is tightly controlled at the transcriptional level. The DNA binding zinc-finger protein CCCTC-binding factor (Ctcf) is a crucial regulator of long-range chromatin interactions and coordinates specific communication between transcription factors and gene expression processes. In this study, the Ctcf gene was specifically deleted in myeloid cells by making use of the transgenic Cre-LoxP system. Conditional deletion of the Ctcf gene in myeloid cells induced a mild phenotype in vivo. Ctcf-deficient mice exhibited significantly reduced expression of major histocompatibility complex (MHC) class II in the liver. Ctcf-deficient macrophages demonstrated a normal surface phenotype and phagocytosis capacity. Upon Toll-like receptor (TLR) stimulation, they produced normal levels of the pro-inflammatory cytokines IL-12 and IL-6, but manifested a strongly impaired capacity to produce tumor-necrosis factor (TNF) and IL-10, as well as to express the IL-10 family members IL-19, IL-20 and IL-24. Taken together, our data demonstrate a role of Ctcf that involves fine-tuning of macrophage function.

Indexed as

Gene Expression RegulationAnimalsBlotting, WesternCCCTC-Binding FactorCells, CulturedCytokinesFlow CytometryImmunoenzyme TechniquesIntegrasesLipopolysaccharidesLiverMacrophagesMajor Histocompatibility ComplexMiceMice, KnockoutMyeloid CellsCCCTC-Binding FactorCre recombinaseCtcf protein, mouseCytokinesIntegrasesLipopolysaccharidesRepressor ProteinsRNA, MessengerToll-Like Receptors

Identifiers

PMID24013844
PMCPMC4002140
OpenAlexW2056119593

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.