Evidence map›Paper›PMID 24013783›Full record

ArticleDiabetologia2013

Trans-ethnic fine mapping identifies a novel independent locus at the 3' end of CDKAL1 and novel variants of several susceptibility loci for type 2 diabetes in a Han Chinese population.

Jane Z Kuo, Wayne Huey-Herng Sheu, Themistocles L Assimes, Yi-Jen Hung, Devin Absher, Yen-Feng Chiu, Jordan Mak, Jun-Sing Wang, Soonil Kwon, Chih-Cheng Hsu and 14 more

Abstract readComparative Study
In one paragraph

Article in Diabetologia, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  5. Observational
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  7. An update on the genetics of hyperuricaemia and gout.Nature reviews. Rheumatology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Jane Z KuoInstitute for Translational Genomics and Population Sciences, Los Angeles BioMedical Research Institute, Harbor-UCLA Medical Center, 1124 W. Carson Street, Torrance, CA, 90502, USA.
Wayne Huey-Herng Sheu
Themistocles L Assimes
Yi-Jen Hung
Devin Absher
Yen-Feng Chiu
Jordan Mak
Jun-Sing Wang
Soonil Kwon
Chih-Cheng Hsu
Mark O Goodarzi
I-Te Lee
Joshua W Knowles
Brittany E Miller
Wen-Jane Lee
Jyh-Ming J Juang
Tzung-Dau Wang
Xiuqing Guo
Kent D Taylor
Lee-Ming Chuang
Chao A Hsiung
Thomas Quertermous
Jerome I Rotter
Yii-Der I Chen

Funding

UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PETER J TONTONOZ · 2003 to 2026
$40.4M
Whole Genome Association for Early Coronary Artery Disease and Related PhenotypesR01HL087647 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2006 to 2008
$4.6M
Genetics of Diabetic Retinopathy in HispanicsR01EY014684 · NEI · CEDARS-SINAI MEDICAL CENTER · PI ROTTER, JEROME I · 2004 to 2011
$4.4M
Mapping Genes for Atherosclerosis and Insulin ResistanceR01HL088457 · NHLBI · CEDARS-SINAI MEDICAL CENTER · PI ROTTER, JEROME I · 2007 to 2010
$3.0M
Insulin Clearance: Candidate and Positional Genetic DeterminantsR01DK079888 · NIDDK · CEDARS-SINAI MEDICAL CENTER · PI GOODARZI, MARK · 2008 to 2012
$1.7M
NCATS NIH HHS UL1 TR000124NCATS NIH HHS UL1 TR000124-01NEI NIH HHS EY014684NEI NIH HHS EY014684-03S1NEI NIH HHS R01 EY014684NHLBI NIH HHS HL087647NHLBI NIH HHS HL088457NHLBI NIH HHS R01 HL087647NHLBI NIH HHS R01 HL088457NIDDK NIH HHS DK063491NIDDK NIH HHS DK079888NIDDK NIH HHS P30 DK063491NIDDK NIH HHS R01 DK079888
6 · The paper itself

Abstract

aims/hypothesisCandidate gene and genome-wide association studies have identified ∼60 susceptibility loci for type 2 diabetes. A majority of these loci have been discovered and tested only in European populations. The aim of this study was to assess the presence and extent of trans-ethnic effects of these loci in an East Asian population.

methodsA total of 9,335 unrelated Chinese Han individuals, including 4,535 with type 2 diabetes and 4,800 non-diabetic ethnically matched controls, were genotyped using the Illumina 200K Metabochip. We tested 50 established loci for type 2 diabetes and related traits (fasting glucose, fasting insulin, 2 h glucose). Disease association with the additive model of inheritance was analysed with logistic regression.

resultsWe found that 14 loci significantly transferred to the Chinese population, with two loci (p = 5.7 × 10(-12) for KCNQ1; p = 5.0 × 10(-8) for CDKN2A/B-CDKN2BAS) reaching independent genome-wide statistical significance. Five of these 14 loci had similar lead single-nucleotide polymorphisms (SNPs) as were found in the European studies while the other nine were different. Further stepwise conditional analysis identified a total of seven secondary signals and an independent novel locus at the 3' end of CDKAL1. CONCLUSIONS/

interpretationThese results suggest that many loci associated with type 2 diabetes are commonly shared between European and Chinese populations. Identification of population-specific SNPs may increase our understanding of the genetic architecture underlying type 2 diabetes in different ethnic populations.

Indexed as

Polymorphism, Single NucleotideAgedAsian PeopleBlood GlucoseCyclin-Dependent Kinase 5Diabetes Mellitus, Type 2DNA Mutational AnalysisFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotyping TechniquesHumansInsulinMaletRNA MethyltransferasesWhite PeopleBlood GlucoseCDKAL1 protein, humanCyclin-Dependent Kinase 5InsulintRNA Methyltransferases

Identifiers

PMID24013783
PMCPMC3825282

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.