Evidence map›Paper›PMID 24013500›Full record

ArticleGenes & development2013

A conserved ncRNA-binding protein recruits silencing factors to heterochromatin through an RNAi-independent mechanism.

Diana B Marina, Smita Shankar, Prashanthi Natarajan, Kenneth J Finn, Hiten D Madhani

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. The histone code of the fungal genusMicrobial genomics · 2022
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Insight Into Chromatin-Enriched RNA: A Key Chromatin Regulator in Tumors.Frontiers in cell and developmental biology · 2021
    Review
  14. Review
  15. Autonomous Pathway:Plant physiology · 2020
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. A current view on long noncoding RNAs in yeast and filamentous fungi.Applied microbiology and biotechnology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Diana B MarinaDepartment of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, California 94158, USA.
Smita Shankar
Prashanthi Natarajan
Kenneth J Finn
Hiten D Madhani
University of California, San Francisco · US

Funding

Mechanisms of Gene SilencingR01GM071801 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Hiten D Madhani · 2005 to 2026
$7.1M
Microbial Pathogenesis and Host DefenseT32AI060537 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joanne N. Engel · 2004 to 2026
$6.5M
NIAID NIH HHS T32 AI060537NIGMS NIH HHS R01 GM071801NIGMS NIH HHS R01GM071801
6 · The paper itself

Abstract

Long noncoding RNAs (lncRNAs) can trigger repressive chromatin, but how they recruit silencing factors remains unclear. In Schizosaccharomyces pombe, heterochromatin assembly on transcribed noncoding pericentromeric repeats requires both RNAi and RNAi-independent mechanisms. In Saccharomyces cerevisiae, which lacks a repressive chromatin mark (H3K9me [methylated Lys9 on histone H3]), unstable ncRNAs are recognized by the RNA-binding protein Nrd1. We show that the S. pombe ortholog Seb1 is associated with pericentromeric lncRNAs. Individual mutation of dcr1+ (Dicer) or seb1+ results in equivalent partial reductions of pericentromeric H3K9me levels, but a double mutation eliminates this mark. Seb1 functions independently of RNAi by recruiting the NuRD (nucleosome remodeling and deacetylase)-related chromatin-modifying complex SHREC (Snf2-HDAC [histone deacetylase] repressor complex).

Indexed as

Gene Expression Regulation, FungalGene SilencingHeterochromatinRepressor ProteinsRibonucleoproteinsRNA InterferenceRNA, Long NoncodingSchizosaccharomycesSchizosaccharomyces pombe ProteinsVesicular Transport ProteinsHeterochromatinnrd1 protein, S pombeRepressor ProteinsRibonucleoproteinsRNA, Long NoncodingSchizosaccharomyces pombe ProteinsVesicular Transport ProteinsheterochromatinNrd1RNAiSeb1SHRECsilencing

Identifiers

PMID24013500
PMCPMC3778239
OpenAlexW2023150570

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.