Evidence map›Paper›PMID 24013217›Full record

ArticleNature cell biology2013

SON connects the splicing-regulatory network with pluripotency in human embryonic stem cells.

Xinyi Lu, Jonathan Göke, Friedrich Sachs, Pierre-Étienne Jacques, Hongqing Liang, Bo Feng, Guillaume Bourque, Paula A Bubulya, Huck-Hui Ng

Abstract read
In one paragraph

Article in Nature cell biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed.

  1. Article
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  5. Biomolecular condensates in immune cell fate.Nature reviews. Immunology · 2025
    Review
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  7. Article
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  20. CHERP Regulates the Alternative Splicing of pre-mRNAs in the Nucleus.International journal of molecular sciences · 2022
    Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Xinyi Lu *Gene Regulation Laboratory, Genome Institute of Singapore, 138672, Singapore.
Jonathan Göke *Gene Regulation Laboratory, Genome Institute of Singapore, 138672, Singapore.
Friedrich SachsGene Regulation Laboratory, Genome Institute of Singapore, 138672, Singapore.
Pierre-Étienne JacquesDepartment of Biology, Université de Sherbrooke, 2500 boulevard de l'Université Sherbrooke, Québec J1K 2R1, Canada.
Hongqing LiangGene Regulation Laboratory, Genome Institute of Singapore, 138672, Singapore.
Bo FengSchool of Biomedical Sciences, Lo Kwee Seong Integrated Biomedical Sciences Building, Chinese University of Hong Kong, Hong Kong 999077, China.
Guillaume BourqueMcGill University & Genome Quebec Innovation Center, 740 Dr Penfield Avenue, Montréal, Québec H3A 1A4, Canada.
Paula A BubulyaDepartment of Biological Sciences, Wright State University, Dayton, Ohio 45435, USA.
Huck-Hui NgGene Regulation Laboratory, Genome Institute of Singapore, 138672, Singapore.

Funding

Pre-mRNA Processing Factors Maintain Normal MitosisR15GM084407 · NIGMS · WRIGHT STATE UNIVERSITY · PI BUBULYA, PAULA A. · 2009 to 2019
$1.3M
NIGMS NIH HHS R15 GM084407
6 · The paper itself

Abstract

Human embryonic stem cells (hESCs) harbour the ability to undergo lineage-specific differentiation into clinically relevant cell types. Transcription factors and epigenetic modifiers are known to play important roles in the maintenance of pluripotency of hESCs. However, little is known about regulation of pluripotency through splicing. In this study, we identify the spliceosome-associated factor SON as a factor essential for the maintenance of hESCs. Depletion of SON in hESCs results in the loss of pluripotency and cell death. Using genome-wide RNA profiling, we identified transcripts that are regulated by SON. Importantly, we confirmed that SON regulates the proper splicing of transcripts encoding for pluripotency regulators such as OCT4, PRDM14, E4F1 and MED24. Furthermore, we show that SON is bound to these transcripts in vivo. In summary, we connect a splicing-regulatory network for accurate transcript production to the maintenance of pluripotency and self-renewal of hESCs.

Indexed as

Gene Regulatory NetworksCell SurvivalDNA-Binding ProteinsEmbryonic Stem CellsGene Expression RegulationHumansMinor Histocompatibility AntigensProtein BindingRNA SplicingTranscriptomeDNA-Binding ProteinsMinor Histocompatibility AntigensSON protein, human

Identifiers

PMID24013217
PMCPMC4097007

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.