Evidence map›Paper›PMID 24011988›Full record

ArticleAmerican journal of human genetics2013

An X-linked cobalamin disorder caused by mutations in transcriptional coregulator HCFC1.

Hung-Chun Yu, Jennifer L Sloan, Gunter Scharer, Alison Brebner, Anita M Quintana, Nathan P Achilly, Irini Manoli, Curtis R Coughlin, Elizabeth A Geiger, Una Schneck and 8 more

Abstract read
In one paragraph

Article in American journal of human genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. From Thanatos to transcription: the emerging biology of THAP proteins.Cellular and molecular life sciences : CMLS · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
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  16. Overexpression ofAmerican journal of undergraduate research · 2023
    Article
  17. Article
  18. Abnormal chondrocyte intercalation in a zebrafish model ofbioRxiv : the preprint server for biology · 2023
    Article
  19. Review
  20. Review

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Hung-Chun YuDepartment of Pediatrics, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Jennifer L Sloan
Gunter Scharer
Alison Brebner
Anita M Quintana
Nathan P Achilly
Irini Manoli
Curtis R Coughlin
Elizabeth A Geiger
Una Schneck
David Watkins
Terttu Suormala
Johan L K Van Hove
Brian Fowler
Matthias R Baumgartner
David S Rosenblatt
Charles P Venditti
Tamim H Shaikh

Funding

Investigations of Methylmalonic Acidemia and Related DisordersZIAHG200318 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI VENDITTI, CHARLES P · 2009 to 2025
$29.7M
Development of Psychopathology, Psychobiology, & BehaviorT32MH015442 · NIMH · UNIVERSITY OF COLORADO DENVER · PI JASON R TREGELLAS · 1985 to 2026
$10.2M
Copy Number Alterations in Genomic DisordersR01GM081519 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI SHAIKH, TAMIM H · 2007 to 2010
$2.4M
CIHR CIHR-M08-15078Intramural NIH HHSNIGMS NIH HHS GM081519NIGMS NIH HHS R01 GM081519NIMH NIH HHS T32 MH015442NIMH NIH HHS T32MH015442
6 · The paper itself

Abstract

Derivatives of vitamin B12 (cobalamin) are essential cofactors for enzymes required in intermediary metabolism. Defects in cobalamin metabolism lead to disorders characterized by the accumulation of methylmalonic acid and/or homocysteine in blood and urine. The most common inborn error of cobalamin metabolism, combined methylmalonic acidemia and hyperhomocysteinemia, cblC type, is caused by mutations in MMACHC. However, several individuals with presumed cblC based on cellular and biochemical analysis do not have mutations in MMACHC. We used exome sequencing to identify the genetic basis of an X-linked form of combined methylmalonic acidemia and hyperhomocysteinemia, designated cblX. A missense mutation in a global transcriptional coregulator, HCFC1, was identified in the index case. Additional male subjects were ascertained through two international diagnostic laboratories, and 13/17 had one of five distinct missense mutations affecting three highly conserved amino acids within the HCFC1 kelch domain. A common phenotype of severe neurological symptoms including intractable epilepsy and profound neurocognitive impairment, along with variable biochemical manifestations, was observed in all affected subjects compared to individuals with early-onset cblC. The severe reduction in MMACHC mRNA and protein within subject fibroblast lines suggested a role for HCFC1 in transcriptional regulation of MMACHC, which was further supported by the identification of consensus HCFC1 binding sites in MMACHC. Furthermore, siRNA-mediated knockdown of HCFC1 expression resulted in the coordinate downregulation of MMACHC mRNA. This X-linked disorder demonstrates a distinct disease mechanism by which transcriptional dysregulation leads to an inborn error of metabolism with a complex clinical phenotype.

Indexed as

Age of OnsetAmino Acid Metabolism, Inborn ErrorsAmino Acid SequenceBinding SitesDNA Mutational AnalysisGene Expression RegulationGene Knockdown TechniquesGenes, X-LinkedGenetic Diseases, X-LinkedGenetic Predisposition to DiseaseHEK293 CellsHost Cell Factor C1HumansHyperhomocysteinemiaInfantMaleHCFC1 protein, humanHost Cell Factor C1Repressor ProteinsRNA, MessengerRNA, Small InterferingTHAP11 protein, humanVitamin B 12

Identifiers

PMID24011988
PMCPMC3769968

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.