Evidence map›Paper›PMID 24010830›Full record

ArticleJournal of negative results in biomedicine2013

Biological constraints limit the use of rapamycin-inducible FKBP12-Inp54p for depleting PIP2 in dorsal root ganglia neurons.

Jaeda C Coutinho-Budd, Samuel B Snider, Brendan J Fitzpatrick, Joseph E Rittiner, Mark J Zylka

Open access · hybridAbstract read
In one paragraph

Article in Journal of negative results in biomedicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jaeda C Coutinho-BuddCurriculum in Neurobiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. zylka@med.unc.edu.
Samuel B Snider
Brendan J Fitzpatrick
Joseph E Rittiner
Mark J Zylka
University of North Carolina at Chapel Hill · US

Funding

UNC Neuroscience Center Research Cores: MicroscopyP30NS045892 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ZYLKA, MARK J. · 2003 to 2022
$11.5M
Harnessing ectonucleotidases to treat chronic painR01NS067688 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ZYLKA, MARK J. · 2009 to 2013
$3.6M
analysis of srGAP2 in cortical development in vitro and in vivoF31NS068038 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COUTINHO-BUDD, JAEDA · 2010 to 2012
$70k
NINDS NIH HHS 1F31NS068038NINDS NIH HHS P30 NS045892NINDS NIH HHS P30NS045892NINDS NIH HHS R01 NS067688
6 · The paper itself

Abstract

backgroundRapamycin-induced translocation systems can be used to manipulate biological processes with precise temporal control. These systems are based on rapamycin-induced dimerization of FK506 Binding Protein 12 (FKBP12) with the FKBP Rapamycin Binding (FRB) domain of mammalian target of rapamycin (mTOR). Here, we sought to adapt a rapamycin-inducible phosphatidylinositol 4,5-bisphosphate (PIP2)-specific phosphatase (Inp54p) system to deplete PIP2 in nociceptive dorsal root ganglia (DRG) neurons.

resultsWe genetically targeted membrane-tethered CFP-FRBPLF (a destabilized FRB mutant) to the ubiquitously expressed Rosa26 locus, generating a Rosa26-FRBPLF knockin mouse. In a second knockin mouse line, we targeted Venus-FKBP12-Inp54p to the Calcitonin gene-related peptide-alpha (CGRPα) locus. We hypothesized that after intercrossing these mice, rapamycin treatment would induce translocation of Venus-FKBP12-Inp54p to the plasma membrane in CGRP+ DRG neurons. In control experiments with cell lines, rapamycin induced translocation of Venus-FKBP12-Inp54p to the plasma membrane, and subsequent depletion of PIP2, as measured with a PIP2 biosensor. However, rapamycin did not induce translocation of Venus-FKBP12-Inp54p to the plasma membrane in FRBPLF-expressing DRG neurons (in vitro or in vivo). Moreover, rapamycin treatment did not alter PIP2-dependent thermosensation in vivo. Instead, rapamycin treatment stabilized FRBPLF in cultured DRG neurons, suggesting that rapamycin promoted dimerization of FRBPLF with endogenous FKBP12.

conclusionsTaken together, our data indicate that these knockin mice cannot be used to inducibly deplete PIP2 in DRG neurons. Moreover, our data suggest that high levels of endogenous FKBP12 could compete for binding to FRBPLF, hence limiting the use of rapamycin-inducible systems to cells with low levels of endogenous FKBP12.

Indexed as

AnimalsBiosensing TechniquesCalcitonin Gene-Related PeptideCell MembraneCells, CulturedGanglia, SpinalHEK293 CellsHeterozygoteHumansHypersensitivityInflammationInositol PhosphatesMiceModels, BiologicalNeuronsPeptidesCalcitonin Gene-Related Peptideinositol 4,5-bisphosphateInositol PhosphatesPeptidesPhosphoprotein PhosphatasesRecombinant Fusion ProteinsSirolimusTacrolimus Binding Protein 1A

Identifiers

PMID24010830
PMCPMC3844522
OpenAlexW2153327264

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.