Evidence map›Paper›PMID 24010715›Full record

ArticleStructure (London, England : 1993)2013

Recommendations of the wwPDB NMR Validation Task Force.

Gaetano T Montelione, Michael Nilges, Ad Bax, Peter Güntert, Torsten Herrmann, Jane S Richardson, Charles D Schwieters, Wim F Vranken, Geerten W Vuister, David S Wishart and 3 more

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed.

  1. Article
  2. The NMR Exchange Format (NEF): Specification and Applications.bioRxiv : the preprint server for biology · 2026
    Article
  3. Associating protein residues in the literature with structural data.Acta crystallographica. Section D, Structural biology · 2026
    Article
  4. Article
  5. Ten rules for a structural bioinformatic analysis.PLoS computational biology · 2025
    Article
  6. Solution Structure of the Broad-Spectrum Bacteriocin Garvicin Q.International journal of molecular sciences · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Blind assessment of monomeric AlphaFold2 protein structure models with experimental NMR data.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2023
    Article
  16. A Comparison of Bonded and Nonbonded Zinc(II) Force Fields with NMR Data.International journal of molecular sciences · 2023
    Article
  17. Article
  18. Article
  19. Review
  20. SpecDB: A relational database for archiving biomolecular NMR spectral data.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2022
    Article

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Gaetano T MontelioneCenter for Advanced Biotechnology and Medicine, Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA. Electronic address: guy@cabm.rutgers.edu.
Michael Nilges
Ad Bax
Peter Güntert
Torsten Herrmann
Jane S Richardson
Charles D Schwieters
Wim F Vranken
Geerten W Vuister
David S Wishart
Helen M Berman
Gerard J Kleywegt
John L Markley

Funding

University of Georgia ProjectU54GM094597 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI MONTELIONE, GAETANO T · 2010 to 2014
$36.9M
Biological Magnetic Resonance Databank: Metabolomics / Small Molecule ActivitiesP41LM005799 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 1996 to 2013
$12.6M
TR&D 3: TECHNOLOGY DEVELOPMENT FOR NMR STUDIES OF SMALL MOLECULES (METABOLOMICS, NATURAL PRODUCTS, METABOLITE-PROTEIN INTERACTIONS) pp.537-585 P41GM103399 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 2012 to 2019
$9.4M
Biomedical ImagingZIACT000090 · CIT · CENTER FOR INFORMATION TECHNOLOGY · PI TRUS, BENES L · 2009 to 2018
$7.8M
New Kind of Quality Management for X-ray &NMR ModelsR01GM073930 · NIGMS · DUKE UNIVERSITY · PI RICHARDSON, DAVID CLAUDE · 2005 to 2013
$2.3M
Biotechnology and Biological Sciences Research Council BB/E007511/1Biotechnology and Biological Sciences Research Council BB/J007471/1Biotechnology and Biological Sciences Research Council BB/J007897/1Intramural NIH HHSNIGMS NIH HHS R01 GM073930NIGMS NIH HHS R01-GM073930NIGMS NIH HHS U54 GM094597NLM NIH HHS P41 LM005799NLM NIH HHS P41 LM05799Wellcome TrustWellcome Trust 075968Wellcome Trust 088944
6 · The paper itself

Abstract

As methods for analysis of biomolecular structure and dynamics using nuclear magnetic resonance spectroscopy (NMR) continue to advance, the resulting 3D structures, chemical shifts, and other NMR data are broadly impacting biology, chemistry, and medicine. Structure model assessment is a critical area of NMR methods development, and is an essential component of the process of making these structures accessible and useful to the wider scientific community. For these reasons, the Worldwide Protein Data Bank (wwPDB) has convened an NMR Validation Task Force (NMR-VTF) to work with wwPDB partners in developing metrics and policies for biomolecular NMR data harvesting, structure representation, and structure quality assessment. This paper summarizes the recommendations of the NMR-VTF, and lays the groundwork for future work in developing standards and metrics for biomolecular NMR structure quality assessment.

Indexed as

Advisory CommitteesDatabases, ProteinGuidelines as TopicKnowledge BasesModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein ConformationProteinsQuality ControlReference StandardsValidation Studies as TopicProteins

Identifiers

PMID24010715
PMCPMC3884077

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.