Evidence map›Paper›PMID 24010407›Full record

ArticleClinical proteomics2013

A multilectin affinity approach for comparative glycoprotein profiling of rheumatoid arthritis and spondyloarthropathy.

Mitali Bhattacharjee, Rakesh Sharma, Renu Goel, Lavanya Balakrishnan, Santosh Renuse, Jayshree Advani, Shantal Tankala Gupta, Renu Verma, Sneha M Pinto, Nirujogi Raja Sekhar and 6 more

Open access · goldAbstract read
In one paragraph

Article in Clinical proteomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

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  8. The mouse curly whiskers (Molecular genetics and metabolism reports · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 8 institutions in 2 countries.

Mitali BhattacharjeeInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Rakesh Sharma *Department of Neurochemistry, National Institute of Mental Health and Neuro Sciences, Bangalore 560029, India.
Renu Goel *Institute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Lavanya BalakrishnanInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Santosh RenuseInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Jayshree AdvaniInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Shantal Tankala GuptaDepartment of Internal Medicine, Armed Forces Medical College, Pune 411040, India.
Renu VermaInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Sneha M PintoInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Nirujogi Raja SekharInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Bipin NairAmrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Kollam 690525, India.
T S Keshava PrasadInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
H C HarshaInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Ramesh JoisDepartment of Rheumatology, Fortis Hospital, Bangalore 560076, India.
Subramanian ShankarDepartment of Internal Medicine, Armed Forces Medical College, Pune 411040, India.
Akhilesh PandeyMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, 733 N. Broadway, Baltimore, MD 21205, USA.
Institute of Bioinformatics · INAmrita Vishwa Vidyapeetham · INArmed Forces Medical College · INKuvempu University · INFortis Hospital · INJohns Hopkins Medicine · USManipal Academy of Higher Education · INNational Institute of Mental Health and Neurosciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundArthritis refers to inflammation of joints and includes common disorders such as rheumatoid arthritis (RA) and spondyloarthropathies (SpAs). These diseases differ mainly in terms of their clinical manifestations and the underlying pathogenesis. Glycoproteins in synovial fluid might reflect the disease activity status in the joints affected by arthritis; yet they have not been systematically studied previously. Although markers have been described for assisting in the diagnosis of RA, there are currently no known biomarkers for SpA. MATERIALS AND

methodsWe sought to determine the relative abundance of glycoproteins in RA and SpA by lectin affinity chromatography coupled to iTRAQ labeling and LC-MS/MS analysis. We also used ELISA to validate the overexpression of VCAM-1, one of the candidate proteins identified in this study, in synovial fluid from RA patients. RESULTS AND DISCUSSION: We identified proteins that were previously reported to be overexpressed in RA including metalloproteinase inhibitor 1 (TIMP1), myeloperoxidase (MPO) and several S100 proteins. In addition, we discovered several novel candidates that were overexpressed in SpA including Apolipoproteins C-II and C-III and the SUN domain-containing protein 3 (SUN3). Novel molecules found overexpressed in RA included extracellular matrix protein 1 (ECM1) and lumican (LUM). We validated one of the candidate biomarkers, vascular cell adhesion molecule 1 (VCAM1), in 20 RA and SpA samples using ELISA and confirmed its overexpression in RA (p-value <0.01). Our quantitative glycoproteomic approach to study arthritic disorders should open up new avenues for additional proteomics-based discovery studies in rheumatological disorders.

Identifiers

PMID24010407
PMCPMC3846907
OpenAlexW2161847911

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.