ArticlePloS one2013
Comparison of the nodule vs. root transcriptome of the actinorhizal plant Datisca glomerata: actinorhizal nodules contain a specific class of defensins.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
19 citing papers in PubMed, 50 citations in OpenAlex.
- Article
- Identification and evolution of nsLTPs in the root nodule nitrogen fixation clade and molecular response of Frankia to AgLTP24.Scientific reports · 2023Article
- Legume NCRs and nodule-specific defensins of actinorhizal plants-Do they share a common origin?PloS one · 2022Article
- Review
- Review
- A Roadmap toward Engineered Nitrogen-Fixing Nodule Symbiosis.Plant communications · 2020Review
- Gene Expression in Nitrogen-Fixing Symbiotic Nodule Cells inThe Plant cell · 2020Review
- The Evolutionary Aspects of Legume Nitrogen-Fixing Nodule Symbiosis.Results and problems in cell differentiation · 2020Article
- Accumulation of and Response to Auxins in Roots and Nodules of the Actinorhizal PlantFrontiers in plant science · 2019Article
- Transcription factors network in root endosymbiosis establishment and development.World journal of microbiology & biotechnology · 2018Review
- Allene oxide synthase, allene oxide cyclase and jasmonic acid levels in Lotus japonicus nodules.PloS one · 2018Article
- Comparative Analysis of the Nodule Transcriptomes ofFrontiers in plant science · 2018Article
- Comparative Transcriptomic Analysis of Two Actinorhizal Plants and the LegumeFrontiers in plant science · 2018Article
- Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.DNA research : an international journal for rapid publication of reports on genes and genomes · 2017Article
- Recent advances in actinorhizal symbiosis signaling.Plant molecular biology · 2016Review
- Alnus peptides modify membrane porosity and induce the release of nitrogen-rich metabolites from nitrogen-fixing Frankia.The ISME journal · 2015Article
- Article
- Identification of potential transcriptional regulators of actinorhizal symbioses in Casuarina glauca and Alnus glutinosa.BMC plant biology · 2014Article
- Role of auxin during intercellular infection of Discaria trinervis by Frankia.Frontiers in plant science · 2014Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Actinorhizal root nodule symbioses are very diverse, and the symbiosis of Datisca glomerata has previously been shown to have many unusual aspects. In order to gain molecular information on the infection mechanism, nodule development and nodule metabolism, we compared the transcriptomes of D. glomerata roots and nodules. Root and nodule libraries representing the 3'-ends of cDNAs were subjected to high-throughput parallel 454 sequencing. To identify the corresponding genes and to improve the assembly, Illumina sequencing of the nodule transcriptome was performed as well. The evaluation revealed 406 differentially regulated genes, 295 of which (72.7%) could be assigned a function based on homology. Analysis of the nodule transcriptome showed that genes encoding components of the common symbiosis signaling pathway were present in nodules of D. glomerata, which in combination with the previously established function of SymRK in D. glomerata nodulation suggests that this pathway is also active in actinorhizal Cucurbitales. Furthermore, comparison of the D. glomerata nodule transcriptome with nodule transcriptomes from actinorhizal Fagales revealed a new subgroup of nodule-specific defensins that might play a role specific to actinorhizal symbioses. The D. glomerata members of this defensin subgroup contain an acidic C-terminal domain that was never found in plant defensins before.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.