Evidence map›Paper›PMID 24009520›Full record

ArticlePLoS genetics2013

Species and population level molecular profiling reveals cryptic recombination and emergent asymmetry in the dimorphic mating locus of C. reinhardtii.

Peter L De Hoff, Patrick Ferris, Bradley J S C Olson, Ayano Miyagi, Sa Geng, James G Umen

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. A conserved RWP-RK transcription factor VSR1 controls gametic differentiation in volvocine algae.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. UV Chromosomes and Haploid Sexual Systems.Trends in plant science · 2018
    Review
  15. Evolutionary divergence of the sex-determining geneDevelopment (Cambridge, England) · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Peter L De HoffThe Salk Institute for Biological Studies, La Jolla, California, United States of America.
Patrick Ferris
Bradley J S C Olson
Ayano Miyagi
Sa Geng
James G Umen
Donald Danforth Plant Science Center · USKansas State University · USSalk Institute for Biological Studies · USUniversity of Arizona · US

Funding

Evolution of Sexually Dimorphic Germ Cells in Volvox carteriR01GM078376 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI UMEN, JAMES GREG · 2006 to 2014
$3.3M
Mechanism of cell size checkpoint control by a Musahi-like RNA binding proteinF32GM086037 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI OLSON, BRADLEY J.S.C. · 2008 to 2010
$143k
NIGMS NIH HHS 5F32GM086037NIGMS NIH HHS F32 GM086037NIGMS NIH HHS GM078376NIGMS NIH HHS R01 GM078376
6 · The paper itself

Abstract

Heteromorphic sex-determining regions or mating-type loci can contain large regions of non-recombining sequence where selection operates under different constraints than in freely recombining autosomal regions. Detailed studies of these non-recombining regions can provide insights into how genes are gained and lost, and how genetic isolation is maintained between mating haplotypes or sex chromosomes. The Chlamydomonas reinhardtii mating-type locus (MT) is a complex polygenic region characterized by sequence rearrangements and suppressed recombination between its two haplotypes, MT+ and MT-. We used new sequence information to redefine the genetic contents of MT and found repeated translocations from autosomes as well as sexually controlled expression patterns for several newly identified genes. We examined sequence diversity of MT genes from wild isolates of C. reinhardtii to investigate the impacts of recombination suppression. Our population data revealed two previously unreported types of genetic exchange in Chlamydomonas MT--gene conversion in the rearranged domains, and crossover exchanges in flanking domains--both of which contribute to maintenance of genetic homogeneity between haplotypes. To investigate the cause of blocked recombination in MT we assessed recombination rates in crosses where the parents were homozygous at MT. While normal recombination was restored in MT+ ×MT+ crosses, it was still suppressed in MT- ×MT- crosses. These data revealed an underlying asymmetry in the two MT haplotypes and suggest that sequence rearrangements are insufficient to fully account for recombination suppression. Together our findings reveal new evolutionary dynamics for mating loci and have implications for the evolution of heteromorphic sex chromosomes and other non-recombining genomic regions.

Indexed as

Recombination, GeneticBiological EvolutionChlamydomonas reinhardtiiGene ConversionGenetic LociHaplotypesReproductionSex ChromosomesTranslocation, Genetic

Identifiers

PMID24009520
PMCPMC3757049
OpenAlexW2067056503

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.