Evidence map›Paper›PMID 24008809›Full record

ArticleGenetica2013

Chromosomal organization of repetitive DNA sequences in Astyanax bockmanni (Teleostei, Characiformes): dispersive location, association and co-localization in the genome.

Duílio M Z A Silva, José Carlos Pansonato-Alves, Ricardo Utsunomia, Sandro Natal Daniel, Diogo Teruo Hashimoto, Claudio Oliveira, Fabio Porto-Foresti, Fausto Foresti

Abstract read
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In one paragraph

Article in Genetica, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
7.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Mobile Elements in Ray-Finned Fish Genomes.Life (Basel, Switzerland) · 2020
    Review
  9. Article
  10. Article
  11. Article
  12. Rex Retroelements and Teleost Genomes: An Overview.International journal of molecular sciences · 2018
    Review
  13. Trends in Karyotype Evolution inFrontiers in genetics · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Origin of B chromosomes inComparative cytogenetics · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Duílio M Z A SilvaDepartamento de Morfologia, Instituto de Biociências, Universidade Estadual Paulista, Distrito de Rubião Junior, s/n, Botucatu, SP, 18618-970, Brazil, duilio@ibb.unesp.br.
José Carlos Pansonato-Alves
Ricardo Utsunomia
Sandro Natal Daniel
Diogo Teruo Hashimoto
Claudio Oliveira
Fabio Porto-Foresti
Fausto Foresti
Universidade Estadual Paulista (Unesp) · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Repetitive DNA sequences constitute a great portion of the genome of eukaryotes and are considered key components to comprehend evolutionary mechanisms and karyotypic differentiation. Aiming to contribute to the knowledge of chromosome structure and organization of some repetitive DNA classes in the fish genome, chromosomes of two allopatric populations of Astyanax bockmanni were analyzed using classic cytogenetics techniques and fluorescent in situ hybridization, with probes for ribosomal DNA sequences, histone DNA and transposable elements. These Astyanax populations showed the same diploid number (2n = 50), however with differences in chromosome morphology, distribution of constitutive heterochromatin, and location of 18S rDNA and retroelement Rex3 sites. In contrast, sites for 5S rDNA and H1, H3 and H4 histones showed to be co-located and highly conserved. Our results indicate that dispersion and variability of 18S rDNA and heterochromatin sites are not associated with macro rearrangements in the chromosome structure of these populations. Similarly, distinct evolutionary mechanisms would act upon histone genes and 5S rDNA, contributing to chromosomal association and co-location of these sequences. Data obtained indicate that distinct mechanisms drive the spreading of repetitive DNAs in the genome of A. bockmanni. Also, mobile elements may account for the polymorphism of the major rDNA sites and heterochromatin in this genus.

Indexed as

DNA Transposable ElementsGenomeTerminal Repeat SequencesAnimalsCharaciformesChromosomesConserved SequenceDNA Copy Number VariationsEvolution, MolecularHistonesRNA, Ribosomal, 18SRNA, Ribosomal, 5SDNA Transposable ElementsHistonesRNA, Ribosomal, 18SRNA, Ribosomal, 5S

Identifiers

PMID24008809
OpenAlexW2000359995

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.