Evidence map›Paper›PMID 24006484›Full record

ArticleMolecular biology of the cell2013

Sec16 influences transitional ER sites by regulating rather than organizing COPII.

Nike Bharucha, Yang Liu, Effrosyni Papanikou, Conor McMahon, Masatoshi Esaki, Philip D Jeffrey, Frederick M Hughson, Benjamin S Glick

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. ER exit in physiology and disease.Frontiers in molecular biosciences · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. The Role of Secretory Pathways inJournal of fungi (Basel, Switzerland) · 2020
    Review
  13. Article
  14. Review
  15. Endoplasmic Reticulum Export of GPI-Anchored Proteins.International journal of molecular sciences · 2019
    Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Nike BharuchaDepartment of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL 60637 Department of Molecular Biology, Princeton University, Princeton, NJ 08544.
Yang Liu
Effrosyni Papanikou
Conor McMahon
Masatoshi Esaki
Philip D Jeffrey
Frederick M Hughson
Benjamin S Glick

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007388 · NIGMS · PRINCETON UNIVERSITY · PI CRISTEA, ILEANA M. · 1985 to 2022
$27.4M
Structural Analysis of Membrane Tethering and Fusion ProteinsR01GM071574 · NIGMS · PRINCETON UNIVERSITY · PI HUGHSON, FREDERICK M · 2005 to 2024
$6.8M
THE TRANSITIONAL ER-GOLGI SYSTEM IN BUDDING YEASTSR01GM061156 · NIGMS · UNIVERSITY OF CHICAGO · PI GLICK, BENJAMIN S · 2000 to 2012
$3.6M
NIGMS NIH HHS R01 GM061156NIGMS NIH HHS R01 GM071574NIGMS NIH HHS T32 GM007388
6 · The paper itself

Abstract

During the budding of coat protein complex II (COPII) vesicles from transitional endoplasmic reticulum (tER) sites, Sec16 has been proposed to play two distinct roles: negatively regulating COPII turnover and organizing COPII assembly at tER sites. We tested these ideas using the yeast Pichia pastoris. Redistribution of Sec16 to the cytosol accelerates tER dynamics, supporting a negative regulatory role for Sec16. To evaluate a possible COPII organization role, we dissected the functional regions of Sec16. The central conserved domain, which had been implicated in coordinating COPII assembly, is actually dispensable for normal tER structure. An upstream conserved region (UCR) localizes Sec16 to tER sites. The UCR binds COPII components, and removal of COPII from tER sites also removes Sec16, indicating that COPII recruits Sec16 rather than the other way around. We propose that Sec16 does not in fact organize COPII. Instead, regulation of COPII turnover can account for the influence of Sec16 on tER sites.

Indexed as

Binding SitesCOP-Coated VesiclesCytosolEndoplasmic ReticulumFungal ProteinsGreen Fluorescent ProteinsImmunoblottingMicroscopy, FluorescenceMutationPichiaProtein BindingProtein TransportTwo-Hybrid System TechniquesFungal ProteinsGreen Fluorescent Proteins

Identifiers

PMID24006484
PMCPMC3814151

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.