Evidence map›Paper›PMID 24006479›Full record

ArticleThe Journal of infectious diseases2013

Profiling of Candida albicans gene expression during intra-abdominal candidiasis identifies biologic processes involved in pathogenesis.

Shaoji Cheng, Cornelius J Clancy, Wenjie Xu, Frank Schneider, Binghua Hao, Aaron P Mitchell, M Hong Nguyen

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  5. Molecular association ofFrontiers in cellular and infection microbiology · 2023
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  7. UsingVirulence · 2022
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  11. Applying the Host-Microbe Damage Response Framework toJournal of fungi (Basel, Switzerland) · 2020
    Review
  12. Article
  13. Article
  14. Journal of fungi (Basel, Switzerland) · 2019
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Shaoji ChengDepartment of Medicine and.
Cornelius J Clancy
Wenjie Xu
Frank Schneider
Binghua Hao
Aaron P Mitchell
M Hong Nguyen
Carnegie Mellon University · USUniversity of Pittsburgh · USUPMC Health System · US

Funding

Genetic Control of Entry into Meiosis in YeastR01AI070272 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MITCHELL, AARON P · 2006 to 2010
$1.9M
NIAID NIH HHS R01 AI070272
6 · The paper itself

Abstract

backgroundThe pathogenesis of intra-abdominal candidiasis is poorly understood.

methodsMice were intraperitoneally infected with Candida albicans (1 × 10(6) colony-forming units) and sterile stool. nanoString assays were used to quantitate messenger RNA for 145 C. albicans genes within the peritoneal cavity at 48 hours.

resultsWithin 6 hours after infection, mice developed peritonitis, characterized by high yeast burdens, neutrophil influx, and a pH of 7.9 within peritoneal fluid. Organ invasion by hyphae and early abscess formation were evident 6 and 24 hours after infection, respectively; abscesses resolved by day 14. nanoString assays revealed adhesion and responses to alkaline pH, osmolarity, and stress as biologic processes activated in the peritoneal cavity. Disruption of the highly-expressed gene RIM101, which encodes an alkaline-regulated transcription factor, did not impact cellular morphology but reduced both C. albicans burden during early peritonitis and C. albicans persistence within abscesses. RIM101 influenced expression of 49 genes during intra-abdominal candidiasis, including previously unidentified Rim101 targets. Overexpression of the RIM101-dependent gene SAP5, which encodes a secreted protease, restored the ability of a rim101 mutant to persist within abscesses.

conclusionsA mouse model of intra-abdominal candidiasis is valuable for studying pathogenesis and C. albicans gene expression. RIM101 contributes to persistence within intra-abdominal abscesses, at least in part through activation of SAP5.

Indexed as

TranscriptomeAbdominal AbscessAnimalsAspartic Acid EndopeptidasesCandida albicansCandidiasisFungal ProteinsGene Expression Regulation, FungalGenes, FungalHost-Pathogen InteractionsMicePeritonitisVirulenceAspartic Acid EndopeptidasesFungal ProteinsSAP5 protein, Candida albicansCandida albicansintra-abdominal candidiasisin vivo gene expressionnanoStringRIM101SAP5

Identifiers

PMID24006479
PMCPMC3789567
OpenAlexW2097653053

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.