ArticleMicrobes and environments2013
Seasonal transition of active bacterial and archaeal communities in relation to water management in paddy soils.
Article in Microbes and environments, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed, 47 citations in OpenAlex.
- Optimising RNA extraction for paddy bulk soil samples for metatranscriptome sequencing.BMC research notes · 2025Article
- Analysis of Soil Microbial Features in a Rice Paddy Field with High Methane Emissions.Microbes and environments · 2025Article
- Gallionellaceae in rice root plaque: metabolic roles in iron oxidation, nutrient cycling, and plant interactions.Applied and environmental microbiology · 2023Article
- Biological nitrogen fixation in the long-term nitrogen-fertilized and unfertilized paddy fields, with special reference to diazotrophic iron-reducing bacteria.Archives of microbiology · 2023Article
- Variation in archaeal and bacterial community profiles and their functional metabolic predictions under the influence of pure and mixed fertilizers in paddy soil.Saudi journal of biological sciences · 2021Article
- DiazotrophicApplied and environmental microbiology · 2020Article
- Description of Three Novel Members in the FamilyMicroorganisms · 2020Article
- Distinct Community Composition of Previously Uncharacterized Denitrifying Bacteria and Fungi across Different Land-Use Types.Microbes and environments · 2020Article
- Dissimilatory Nitrate Reduction to Ammonium and Responsible Microbes in Japanese Rice Paddy Soil.Microbes and environments · 2020Article
- The influence of temperature and pH on bacterial community composition of microbial mats in hot springs from Costa Rica.MicrobiologyOpen · 2019Article
- Bacterial Community of the Rice Floodwater Using Cultivation-Independent Approaches.International journal of microbiology · 2018Article
- Crop Rotation and Straw Application Impact Microbial Communities in Italian and Philippine Soils and the Rhizosphere ofFrontiers in microbiology · 2018Article
- Metagenomic potential for and diversity of N-cycle driving microorganisms in the Bothnian Sea sediment.MicrobiologyOpen · 2017Article
- Predominant but Previously-overlooked Prokaryotic Drivers of Reductive Nitrogen Transformation in Paddy Soils, Revealed by Metatranscriptomics.Microbes and environments · 2017Article
- Response of Methanogenic Microbial Communities to Desiccation Stress in Flooded and Rain-Fed Paddy Soil from Thailand.Frontiers in microbiology · 2017Article
- H2-Producing Bacterial Community during Rice Straw Decomposition in Paddy Field Soil: Estimation by an Analysis of [FeFe]-Hydrogenase Gene Transcripts.Microbes and environments · 2016Article
- Denitrification and Nitrate-Dependent Fe(II) Oxidation in Various Pseudogulbenkiania Strains.Microbes and environments · 2016Article
- Comparison of community structures of Candidatus Methylomirabilis oxyfera-like bacteria of NC10 phylum in different freshwater habitats.Scientific reports · 2016Article
- Are Symbiotic Methanotrophs Key Microbes for N Acquisition in Paddy Rice Root?Microbes and environments · 2016Review
- Responses of Methanogenic and Methanotrophic Communities to Elevated Atmospheric COFrontiers in microbiology · 2016Article
Corrections and comments
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Paddy soils have an environment in which waterlogging and drainage occur during the rice growing season. Fingerprinting analysis based on soil RNA indicated that active microbial populations changed in response to water management conditions, although the fundamental microbial community was stable as assessed by DNA-based fingerprinting analysis. Comparative clone library analysis based on bacterial and archaeal 16S rRNAs (5,277 and 5,436 clones, respectively) revealed stable and variable members under waterlogged or drained conditions. Clones related to the class Deltaproteobacteria and phylum Euryarchaeota were most frequently obtained from the samples collected under both waterlogged and drained conditions. Clones related to syntrophic hydrogen-producing bacteria, hydrogenotrophic methanogenic archaea, rice cluster III, V, and IV, and uncultured crenarchaeotal group 1.2 appeared in greater proportion in the samples collected under waterlogged conditions than in those collected under drained conditions, while clones belonging to rice cluster VI related to ammonia-oxidizing archaea (AOA) appeared at higher frequency in the samples collected under drained conditions than in those collected under waterlogged conditions. These results suggested that hydrogenotrophic methanogenesis may become active under waterlogged conditions, whereas ammonia oxidation may progress by rice cluster VI becoming active under drained conditions in the paddy field.
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