Evidence map›Paper›PMID 24005052›Full record

ArticleThe Journal of investigative dermatology2014

Prognostic impact of PHIP copy number in melanoma: linkage to ulceration.

Vladimir Bezrookove, David De Semir, Mehdi Nosrati, Schuyler Tong, Clayton Wu, Suresh Thummala, Altaf A Dar, Stanley P L Leong, James E Cleaver, Richard W Sagebiel and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of investigative dermatology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Structural Homology Fails to Predict Secretion Efficiency inInternational journal of molecular sciences · 2025
    Article
  3. Article
  4. Review
  5. Article
  6. PHIP drives glioblastoma motility and invasion by regulating the focal adhesion complex.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  7. Review
  8. Article
  9. Role of ElevatedClinical cancer research : an official journal of the American Association for Cancer Research · 2018
    Article
  10. PHIP as a therapeutic target for driver-negative subtypes of melanoma, breast, and lung cancer.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  11. Article
  12. PHIPing out: a genetic basis for tumor ulceration.The Journal of investigative dermatology · 2014
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Vladimir Bezrookove *Center for Melanoma Research and Treatment, California Pacific Medical Center and Research Institute, San Francisco, California.
David De Semir *Center for Melanoma Research and Treatment, California Pacific Medical Center and Research Institute, San Francisco, California.
Mehdi NosratiCenter for Melanoma Research and Treatment, California Pacific Medical Center and Research Institute, San Francisco, California.
Schuyler TongCenter for Melanoma Research and Treatment, California Pacific Medical Center and Research Institute, San Francisco, California.
Clayton WuCenter for Melanoma Research and Treatment, California Pacific Medical Center and Research Institute, San Francisco, California.
Suresh ThummalaCenter for Melanoma Research and Treatment, California Pacific Medical Center and Research Institute, San Francisco, California.
Altaf A DarCenter for Melanoma Research and Treatment, California Pacific Medical Center and Research Institute, San Francisco, California.
Stanley P L LeongCenter for Melanoma Research and Treatment, California Pacific Medical Center and Research Institute, San Francisco, California.
James E CleaverUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.
Richard W SagebielCenter for Melanoma Research and Treatment, California Pacific Medical Center and Research Institute, San Francisco, California.
James R MillerCenter for Melanoma Research and Treatment, California Pacific Medical Center and Research Institute, San Francisco, California.
Mohammed Kashani-SabetCenter for Melanoma Research and Treatment, California Pacific Medical Center and Research Institute, San Francisco, California.
California Pacific Medical Center · USUCSF Helen Diller Family Comprehensive Cancer Center · US

Funding

Validation of Genomic Targets in MelanomaR01CA114337 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KASHANI-SABET, MOHAMMED · 2005 to 2015
$3.2M
Molecular Classification of Primary Cutaneous MelanomaR01CA122947 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KASHANI-SABET, MOHAMMED · 2007 to 2011
$1.5M
NCI NIH HHS CA114337NCI NIH HHS CA122947NCI NIH HHS R01 CA114337NCI NIH HHS R01 CA122947
6 · The paper itself

Abstract

Ulceration is an important prognostic factor in melanoma whose biologic basis is poorly understood. Here we assessed the prognostic impact of pleckstrin homology domain-interacting protein (PHIP) copy number and its relationship to ulceration. PHIP copy number was determined using fluorescence in situ hybridization (FISH) in a tissue microarray cohort of 238 melanomas. Elevated PHIP copy number was associated with significantly reduced distant metastasis-free survival (DMFS; P=0.01) and disease-specific survival (DSS; P=0.009) by Kaplan-Meier analyses. PHIP FISH scores were independently predictive of DMFS (P=0.03) and DSS (P=0.03). Increased PHIP copy number was an independent predictor of ulceration status (P=0.04). The combined impact of increased PHIP copy number and tumor vascularity on ulceration status was highly significant (P<0.0001). Stable suppression of PHIP in human melanoma cells resulted in significantly reduced glycolytic activity in vitro, with lower expression of lactate dehydrogenase 5, hypoxia-inducible factor 1 alpha subunit, and vascular endothelial growth factor, and was accompanied by reduced microvessel density in vivo. These results provide further support for PHIP as a molecular prognostic marker of melanoma, and reveal a significant linkage between PHIP levels and ulceration. Moreover, they suggest that ulceration may be driven by increased glycolysis and angiogenesis.

Indexed as

AdultAgedAnimalsBiomarkers, TumorCell Line, TumorFemaleGene DosageHumansIntracellular Signaling Peptides and ProteinsKaplan-Meier EstimateMaleMelanomaMiceMice, NudeMiddle AgedNeoplasm TransplantationBiomarkers, TumorIntracellular Signaling Peptides and ProteinsPHIP protein, human

Identifiers

PMID24005052
PMCPMC3945648
OpenAlexW2079868547

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.