Evidence map›Paper›PMID 24005039›Full record

ArticleNucleic acids research2013

The head module of Mediator directs activation of preloaded RNAPII in vivo.

Sarah K Lee, Xu Chen, Liangqun Huang, Laurie A Stargell

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.1field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Transcriptomic Insights into the Effect of Melatonin inAntioxidants (Basel, Switzerland) · 2020
    Article
  3. Review
  4. Article
  5. Article
  6. Applied and environmental microbiology · 2017
    Article
  7. The Mediator complex: a central integrator of transcription.Nature reviews. Molecular cell biology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sarah K LeeDepartment of Biochemistry and Molecular Biology, Colorado State University, CO 80523, USA.
Xu Chen
Liangqun Huang
Laurie A Stargell
Colorado State University · US

Funding

project 3P01GM088409 · NIGMS · COLORADO STATE UNIVERSITY · PI NYBORG, JENNIFER K. · 2010 to 2014
$7.3M
NIGMS NIH HHS P01 GM088409NIGMS NIH HHS P01GM088409
6 · The paper itself

Abstract

The successful synthesis of a transcript by RNA polymerase II (RNAPII) is a multistage process with distinct rate-limiting steps that can vary depending on the particular gene. A growing number of genes in a variety of organisms are regulated at steps after the recruitment of RNAPII. The best-characterized Saccharomyces cerevisiae gene regulated in this manner is CYC1. This gene has high occupancy of RNAPII under non-inducing conditions, defining it as a poised gene. Here, we find that subunits of the head module of Mediator, Med18 and Med20, and Med19 are required for activation of transcription at the CYC1 promoter in response to environmental cues. These subunits of Mediator are required at the preloaded promoter for normal levels of recruitment and activity of the general transcription factor TFIIH. Strikingly, these Mediator components are dispensable for activation by the same activator at a different gene, which lacks a preloaded polymerase in the promoter region. Based on these results and other studies, we speculate that Mediator plays an essential role in triggering an inactive polymerase at CYC1 into a productively elongating form.

Indexed as

Gene Expression Regulation, FungalCarbonCytochromes cGene DeletionMediator ComplexOxidative StressPromoter Regions, GeneticRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsCarbonCYC1 protein, S cerevisiaeCytochromes cMediator ComplexRNA Polymerase IIROX3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSRB2 protein, S cerevisiaeSRB5 protein, S cerevisiaeTranscription FactorsYAP1 protein, S cerevisiae

Identifiers

PMID24005039
PMCPMC3905900
OpenAlexW2123359376

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.