Evidence map›Paper›PMID 24003422›Full record

ArticleAnnals of laboratory medicine2013

Evaluation of vancomycin resistance 3 multiplexed PCR assay for detection of vancomycin-resistant enterococci from rectal swabs.

Yesim Cekin, Aylin Erman Daloğlu, Dilara Oğünç, Betil Ozhak Baysan, Duygu Dağlar, Dilara Inan, Derya Mutlu, Gözde Ongüt, Dilek Colak

Open access · hybridAbstract readEvaluation Study
In one paragraph

Article in Annals of laboratory medicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Real-Time PCR Assay for Rapid and Simultaneous Detection ofDiagnostics (Basel, Switzerland) · 2021
    Article
  3. Article
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Yesim CekinClinical Microbiology, Antalya Research and Training Hospital, Antalya, Turkey.
Aylin Erman Daloğlu
Dilara Oğünç
Betil Ozhak Baysan
Duygu Dağlar
Dilara Inan
Derya Mutlu
Gözde Ongüt
Dilek Colak
Akdeniz University · TRAntalya Eğitim ve Araştırma Hastanesi · TRSerik Devlet Hastanesi

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundActive screening for vancomycin-resistant enterococci (VRE) using rectal specimens is recommended to limit the spread of antimicrobial resistance within certain high-risk populations. We evaluated the diagnostic performance of Vancomycin Resistance 3 Multiplexed Tandem PCR assay (AusDiagnostics, Australia), a rapid multiplex real-time PCR assay that detects vanA and/or vanB.

methodsTwo-hundred-and-eleven rectal swabs from Hematology and Oncology unit were submitted for VRE surveillance via direct detection of vanA and/or vanB by culture and by using Vancomycin Resistance 3 Multiplexed Tandem PCR assay. Enterococci were identified to the species level by using standard biochemical tests and BD Phoenix Automated Microbiology System (BD Diagnostic Systems, USA). Vancomycin susceptibility of enterococci was determined using Etest (BioMerieux, France).

resultsCompared to the culture method, Vancomycin Resistance 3 Multiplexed Tandem PCR assay had a sensitivity of 84.0%, specificity of 98.8%, positive predictive value (PPV) of 91.3%, and negative predictive value (NPV) of 97.6%. The assay failed to detect 18 (8.5%) specimens because of the presence of PCR inhibitors; of the remaining 193 specimens, 25 (12.9%) were positive, 23 for vanA, and 2 for vanB. Although both sensitivity and specificity for vanA VRE was 100% compared to the culture method, all vanB-positive specimens tested negative by VRE culture.

conclusionsVancomycin Resistance 3 Multiplexed Tandem PCR assay is a rapid and laborsaving option for VRE surveillance for direct use on rectal swabs. However, the high rate of PCR failure owing to the inhibitors in the specimens and the low specificity for vanB should be considered when interpreting the results.

Indexed as

Multiplex Polymerase Chain ReactionBacterial ProteinsCarbon-Oxygen LigasesDNA, BacterialEnterococcusHumansReagent Kits, DiagnosticRectumSensitivity and SpecificityVancomycinVancomycin ResistanceBacterial ProteinsCarbon-Oxygen LigasesDNA, BacterialReagent Kits, DiagnosticVanA ligase, BacteriaVanB protein, EnterococcusVancomycinEnterococcus faeciumPCRVancomycin resistance

Identifiers

PMID24003422
PMCPMC3756236
OpenAlexW2106095664

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.