Evidence map›Paper›PMID 24002747›Full record

ArticleMicrobiology (Reading, England)2013

Host range diversification within the IncP-1 plasmid group.

Hirokazu Yano, Linda M Rogers, Molly G Knox, Holger Heuer, Kornelia Smalla, Celeste J Brown, Eva M Top

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 43 citations in OpenAlex.

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  18. Fate of Antibiotic ResistantFrontiers in microbiology · 2019
    Article
  19. Article
  20. Source-sink plasmid transfer dynamics maintain gene mobility in soil bacterial communities.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Hirokazu YanoDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844, USA.
Linda M RogersDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844, USA.
Molly G KnoxDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844, USA.
Holger HeuerJulius Kühn-Institut - Federal Research Centre for Cultivated Plants (JKI), Institute for Epidemiology and Pathogen Diagnostics, Messeweg 11-12, 38104 Braunschweig, Germany.
Kornelia SmallaJulius Kühn-Institut - Federal Research Centre for Cultivated Plants (JKI), Institute for Epidemiology and Pathogen Diagnostics, Messeweg 11-12, 38104 Braunschweig, Germany.
Celeste J BrownDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844, USA.
Eva M TopDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844, USA.
University of Idaho · USJulius Kühn-Institut · DE

Funding

THE ORIGIN AND SPREAD OF MOSAIC PLASMIDS ENCODING MULTI-DRUG RESISTANCE(Research Supplement to Promote Diversity)R01AI084918 · NIAID · UNIVERSITY OF IDAHO · PI TOP, EVA M. · 2010 to 2022
$3.6M
NIAID NIH HHS R01 AI084918
6 · The paper itself

Abstract

Broad-host-range plasmids play a critical role in the spread of antibiotic resistance and other traits. In spite of increasing information about the genomic diversity of closely related plasmids, the relationship between sequence divergence and host range remains unclear. IncP-1 plasmids are currently classified into six subgroups based on the genetic distance of backbone genes. We investigated whether plasmids from two subgroups exhibit a different host range, using two IncP-1γ plasmids, an IncP-1β plasmid and their minireplicons. Efficiencies of plasmid establishment and maintenance were compared using five species that belong to the Alphaproteobacteria, Betaproteobacteria and Gammaproteobacteria. The IncP-1β plasmid replicated and persisted in all five hosts in the absence of selection. Of the two IncP-1γ plasmids, both were unable to replicate in alphaproteobacterial host Sphingobium japonicum, and one established itself in Agrobacterium tumefaciens but was very unstable. In contrast, both IncP-1γ minireplicons, which produced higher levels of replication initiation protein than the wild-type plasmids, replicated in all strains, suggesting that poor establishment of the native plasmids is in part due to suboptimal replication initiation gene regulation. The findings suggest that host ranges of distinct IncP-1 plasmids only partially overlap, which may limit plasmid recombination and thus result in further genome divergence.

Indexed as

Host SpecificityPlasmidsAlphaproteobacteriaBetaproteobacteriaDNA ReplicationGammaproteobacteriaGenomic Instability

Identifiers

PMID24002747
PMCPMC3836486
OpenAlexW2143344354

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.