Evidence map›Paper›PMID 24002059›Full record

ArticleInfection and immunity2013

Small-molecule inhibitor of the Shigella flexneri master virulence regulator VirF.

Veerendra Koppolu, Ichie Osaka, Jeff M Skredenske, Bria Kettle, P Scott Hefty, Jiaqin Li, Susan M Egan

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. Fatty Acids AbolishMicrobiology spectrum · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Pathogens (Basel, Switzerland) · 2021
    Review
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  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Veerendra KoppoluDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas, USA.
Ichie Osaka
Jeff M Skredenske
Bria Kettle
P Scott Hefty
Jiaqin Li
Susan M Egan
University of Kansas · US

Funding

PHARMACEUTICAL ASPECTS OF BIOTECHNOLOGY TRAININGT32GM008359 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI SIAHAAN, TERUNA J., VOLKIN, DAVID · 1989 to 2018
$5.0M
Regulation of Virulence Gene Expression in ChlamydiaR01AI079083 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI HEFTY, P SCOTT · 2010 to 2014
$1.8M
Biomechanical and Computational Molecular Design of Microbicide Delivery SystemsR33AI082697 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI KIEWEG, SARAH · 2011 to 2013
$1.3M
Transcription Activation at the rhaBAD OperonR01GM055099 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI EGAN, SUSAN M · 2005 to 2008
$820k
Biomechanical and Computational Molecular Design of Microbicide Delivery SystemsR21AI082697 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI KIEWEG, SARAH · 2009 to 2010
$400k
NIAID NIH HHS AI079083NIAID NIH HHS AI082697NIAID NIH HHS R01 AI079083NIAID NIH HHS R21 AI082697NIAID NIH HHS R33 AI082697NIGMS NIH HHS R01 GM055099NIGMS NIH HHS R01GM55099NIGMS NIH HHS T32 GM008359NIGMS NIH HHS T32GM008359
6 · The paper itself

Abstract

VirF is an AraC family transcriptional activator that is required for the expression of virulence genes associated with invasion and cell-to-cell spread by Shigella flexneri, including multiple components of the type three secretion system (T3SS) machinery and effectors. We tested a small-molecule compound, SE-1 (formerly designated OSSL_051168), which we had identified as an effective inhibitor of the AraC family proteins RhaS and RhaR, for its ability to inhibit VirF. Cell-based reporter gene assays with Escherichia coli and Shigella, as well as in vitro DNA binding assays with purified VirF, demonstrated that SE-1 inhibited DNA binding and transcription activation (likely by blocking DNA binding) by VirF. Analysis of mRNA levels using real-time quantitative reverse transcription-PCR (qRT-PCR) further demonstrated that SE-1 reduced the expression of the VirF-dependent virulence genes icsA, virB, icsB, and ipaB in Shigella. We also performed eukaryotic cell invasion assays and found that SE-1 reduced invasion by Shigella. The effect of SE-1 on invasion required preincubation of Shigella with SE-1, in agreement with the hypothesis that SE-1 inhibited the expression of VirF-activated genes required for the formation of the T3SS apparatus and invasion. We found that the same concentrations of SE-1 had no detectable effects on the growth or metabolism of the bacterial cells or the eukaryotic host cells, respectively, indicating that the inhibition of invasion was not due to general toxicity. Overall, SE-1 appears to inhibit transcription activation by VirF, exhibits selectivity toward AraC family proteins, and has the potential to be developed into a novel antibacterial agent.

Indexed as

AnimalsCell LineDNA, BacterialEndocytosisEscherichia coliFibroblastsGene Expression ProfilingGene Expression Regulation, BacterialMiceProtein BindingQuinolinesReal-Time Polymerase Chain ReactionShigella flexneriTranscriptional ActivationTranscription FactorsVirulence Factors1-butyl-4-nitromethyl-3-quinolin-2-yl-4H-quinolineDNA, BacterialQuinolinesTranscription FactorsVirulence Factors

Identifiers

PMID24002059
PMCPMC3811841
OpenAlexW2098229174

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.