Evidence map›Paper›PMID 24001774›Full record

ArticleMolecular and cellular biology2013

Structure and dimerization properties of the aryl hydrocarbon receptor PAS-A domain.

Dalei Wu, Nalini Potluri, Youngchang Kim, Fraydoon Rastinejad

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 95 citations in OpenAlex.

  1. Juvenile hormone receptor relies on conserved domain interfaces for dimerization-dependent activity.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  8. Heliyon · 2024
    Article
  9. Mechanisms underlying aryl hydrocarbon receptor-driven divergent macrophage function.Toxicological sciences : an official journal of the Society of Toxicology · 2024
    Review
  10. Review
  11. Review
  12. Dimerization Rules of Mammalian PAS Proteins.Journal of molecular biology · 2024
    Review
  13. Review
  14. Article
  15. Article
  16. Article
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  18. Article
  19. Time to target the circadian clock for drug discovery.Trends in biochemical sciences · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Dalei WuMetabolic Signaling and Disease Program, Sanford-Burnham Medical Research Institute, Orlando, Florida, USA.
Nalini Potluri
Youngchang Kim
Fraydoon Rastinejad
Sanford Burnham Prebys Medical Discovery Institute · USArgonne National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The aryl hydrocarbon receptor (AHR) is a ligand-dependent transcription factor that binds to xenobiotics and responds by regulating the expression of gene programs required for detoxification and metabolism. AHR and its heterodimerization partner aryl hydrocarbon receptor nuclear translocator (ARNT) belong to the basic helix-loop-helix (bHLH)-PER-ARNT-SIM (PAS) family of transcription factors. Here we report the 2.55-Å-resolution crystal structure of the mouse AHR PAS-A domain, which represents the first AHR-derived protein structure. The AHR PAS-A domain forms a helix-swapped homodimer in the crystal and also in solution. Through a detailed mutational analysis of all interface residues, we identified several hydrophobic residues that are important for AHR dimerization and function. Our crystallographic visualization of AHR PAS-A dimerization leads us to propose a mode of heterodimerization with ARNT that is supported by both biochemical and cell-based data. Our studies also highlight the residues of other mammalian bHLH-PAS proteins that are likely involved in their homo- or heterodimerization.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAnimalsBasic Helix-Loop-Helix ProteinsConserved SequenceCrystallography, X-RayHydrophobic and Hydrophilic InteractionsMiceModels, MolecularMolecular Sequence DataPoint MutationProtein Interaction Domains and MotifsProtein MultimerizationProtein Structure, QuaternaryProtein Structure, SecondaryReceptors, Aryl HydrocarbonAhr protein, mouseBasic Helix-Loop-Helix ProteinsReceptors, Aryl Hydrocarbon

Identifiers

PMID24001774
PMCPMC3811902
OpenAlexW2151481630

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.