Evidence map›Paper›PMID 24000349›Full record

ArticleReproduction (Cambridge, England)2013

Sequence-specific promoter elements regulate temporal-specific changes in chromatin required for testis-specific activation of the Pgk2 gene.

Zhangsheng Yang, Hirotaka Yoshioka, John R McCarrey

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Reproduction (Cambridge, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Zhangsheng YangDepartment of Biology, The University of Texas at San Antonio, 1 UTSA Circle, San Antonio, Texas 78249, USA.
Hirotaka Yoshioka
John R McCarrey
Hiroshima University · JPThe University of Texas at San Antonio · USThe University of Texas Health Science Center at San Antonio · US

Funding

Regulation of a Spermatogenesis-Specific GeneR01HD046637 · NICHD · UNIVERSITY OF TEXAS SAN ANTONIO · PI MCCARREY, JOHN R · 2005 to 2009
$1.5M
NICHD NIH HHS R01 HD046637NICHD NIH HHS R01 HD46637
6 · The paper itself

Abstract

The phosphoglycerate kinase-2 (Pgk2) gene is regulated in a tissue-, cell type-, and developmental stage-specific manner during spermatogenesis and is required for normal sperm motility and fertility in mammals. Activation of Pgk2 transcription is regulated by testis-specific demethylation of DNA and binding of testis-specific transcription factors to enhancer and core promoter elements. Here, we show that chromatin remodeling including reconfiguration of nucleosomes and changes in histone modifications is also associated with transcriptional activation of the Pgk2 gene during spermatogenesis. Developmental studies indicate that the order of events involved in transcriptional activation of the Pgk2 gene includes demethylation of DNA in T₁- and T₂-prospermatogonia, binding of a factor to the CAAT box in type A and B spermatogonia, followed by recruitment of chromatin remodeling factors, displacement of a nucleosome from the Pgk2 promoter region, binding of factors to the Pgk2 core promoter and enhancer regions, and, finally, initiation of transcription in primary spermatocytes. Transgene studies show that Pgk2 core promoter elements are required to direct demethylation of DNA and reconfiguration of nucleosomes, whereas both enhancer and core promoter elements are required to direct changes in histone modifications and initiation of transcription. These results provide novel insight into the developmental order of molecular events required to activate tissue-specific transcription of the Pgk2 gene, the distinct elements in the 5'-regulatory region of the Pgk2 gene that regulate each of these events, and the relationship among these events in that each step in this process appears to be a necessary prerequisite for the subsequent step.

Indexed as

Chromatin Assembly and DisassemblyPromoter Regions, GeneticSexual MaturationSpermatogenesisTranscriptional ActivationAnimalsDNA MethylationEnhancer Elements, GeneticHistonesHumansIsoenzymesMaleMiceMice, TransgenicNucleosomesOrgan SpecificityHistonesIsoenzymesNucleosomesPhosphoglycerate Kinasephosphoglycerate kinase, testis specific

Identifiers

PMID24000349
PMCPMC3891403
OpenAlexW2165145471

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.